Matches in SemOpenAlex for { <https://semopenalex.org/work/W4387346543> ?p ?o ?g. }
Showing items 1 to 89 of
89
with 100 items per page.
- W4387346543 abstract "Computational tools have become increasingly important to the advancement of biological research. Despite the existence of datasharing principles such as FAIR, there has been little attention paid to ensuring that computational tools provide a platform to compare experimental results and data across different studies. Tools often are lightly documented, non-extensible, and provide different levels of accuracy of their representation. This lack of standardization in biological research reduces the potential power for new insight and discovery and makes it hard for biologists to experiment, compare, and trust results between different studies. In this poster we present our experience using four tools that perform flux balance analysis, on a set of different metabolic models. We frame our work around a proposed principle, akin to FAIR, aimed at bioinformatics tools. We call this CORE (Comparable, Open, Reliable and Extensible), and find the biggest challenges to be with comparability between tools. We also find that while the tools are all open source, without a deep understanding of the code base, they have insufficient openness. We needed to reach out to developers to resolve many of our questions, and we were still left with unexpected behaviors. We present lessons learned as a path to future improvement using the CORE principles." @default.
- W4387346543 created "2023-10-05" @default.
- W4387346543 creator A5020147981 @default.
- W4387346543 creator A5046165262 @default.
- W4387346543 creator A5068737378 @default.
- W4387346543 date "2023-09-03" @default.
- W4387346543 modified "2023-10-06" @default.
- W4387346543 title "CORE: Comparable, Open, Reliable, Extensible Software: An Experience Report of Four Flux Balance Analysis Tools" @default.
- W4387346543 cites W3206611000 @default.
- W4387346543 cites W4306173528 @default.
- W4387346543 doi "https://doi.org/10.1145/3584371.3613005" @default.
- W4387346543 hasPublicationYear "2023" @default.
- W4387346543 type Work @default.
- W4387346543 citedByCount "0" @default.
- W4387346543 crossrefType "proceedings-article" @default.
- W4387346543 hasAuthorship W4387346543A5020147981 @default.
- W4387346543 hasAuthorship W4387346543A5046165262 @default.
- W4387346543 hasAuthorship W4387346543A5068737378 @default.
- W4387346543 hasBestOaLocation W43873465431 @default.
- W4387346543 hasConcept C111919701 @default.
- W4387346543 hasConcept C114614502 @default.
- W4387346543 hasConcept C115903868 @default.
- W4387346543 hasConcept C126042441 @default.
- W4387346543 hasConcept C15744967 @default.
- W4387346543 hasConcept C167091322 @default.
- W4387346543 hasConcept C177264268 @default.
- W4387346543 hasConcept C17744445 @default.
- W4387346543 hasConcept C188087704 @default.
- W4387346543 hasConcept C197947376 @default.
- W4387346543 hasConcept C199360897 @default.
- W4387346543 hasConcept C199539241 @default.
- W4387346543 hasConcept C2164484 @default.
- W4387346543 hasConcept C2522767166 @default.
- W4387346543 hasConcept C2776359362 @default.
- W4387346543 hasConcept C2776760102 @default.
- W4387346543 hasConcept C2777904410 @default.
- W4387346543 hasConcept C32833848 @default.
- W4387346543 hasConcept C33923547 @default.
- W4387346543 hasConcept C41008148 @default.
- W4387346543 hasConcept C60644358 @default.
- W4387346543 hasConcept C76155785 @default.
- W4387346543 hasConcept C77805123 @default.
- W4387346543 hasConcept C84976871 @default.
- W4387346543 hasConcept C86803240 @default.
- W4387346543 hasConcept C94625758 @default.
- W4387346543 hasConceptScore W4387346543C111919701 @default.
- W4387346543 hasConceptScore W4387346543C114614502 @default.
- W4387346543 hasConceptScore W4387346543C115903868 @default.
- W4387346543 hasConceptScore W4387346543C126042441 @default.
- W4387346543 hasConceptScore W4387346543C15744967 @default.
- W4387346543 hasConceptScore W4387346543C167091322 @default.
- W4387346543 hasConceptScore W4387346543C177264268 @default.
- W4387346543 hasConceptScore W4387346543C17744445 @default.
- W4387346543 hasConceptScore W4387346543C188087704 @default.
- W4387346543 hasConceptScore W4387346543C197947376 @default.
- W4387346543 hasConceptScore W4387346543C199360897 @default.
- W4387346543 hasConceptScore W4387346543C199539241 @default.
- W4387346543 hasConceptScore W4387346543C2164484 @default.
- W4387346543 hasConceptScore W4387346543C2522767166 @default.
- W4387346543 hasConceptScore W4387346543C2776359362 @default.
- W4387346543 hasConceptScore W4387346543C2776760102 @default.
- W4387346543 hasConceptScore W4387346543C2777904410 @default.
- W4387346543 hasConceptScore W4387346543C32833848 @default.
- W4387346543 hasConceptScore W4387346543C33923547 @default.
- W4387346543 hasConceptScore W4387346543C41008148 @default.
- W4387346543 hasConceptScore W4387346543C60644358 @default.
- W4387346543 hasConceptScore W4387346543C76155785 @default.
- W4387346543 hasConceptScore W4387346543C77805123 @default.
- W4387346543 hasConceptScore W4387346543C84976871 @default.
- W4387346543 hasConceptScore W4387346543C86803240 @default.
- W4387346543 hasConceptScore W4387346543C94625758 @default.
- W4387346543 hasFunder F4320306076 @default.
- W4387346543 hasFunder F4320306084 @default.
- W4387346543 hasLocation W43873465431 @default.
- W4387346543 hasOpenAccess W4387346543 @default.
- W4387346543 hasPrimaryLocation W43873465431 @default.
- W4387346543 hasRelatedWork W1531971336 @default.
- W4387346543 hasRelatedWork W2159398884 @default.
- W4387346543 hasRelatedWork W2364540412 @default.
- W4387346543 hasRelatedWork W2401862472 @default.
- W4387346543 hasRelatedWork W2625422207 @default.
- W4387346543 hasRelatedWork W2901590126 @default.
- W4387346543 hasRelatedWork W3097002709 @default.
- W4387346543 hasRelatedWork W3199225731 @default.
- W4387346543 hasRelatedWork W4233921102 @default.
- W4387346543 hasRelatedWork W2497275692 @default.
- W4387346543 isParatext "false" @default.
- W4387346543 isRetracted "false" @default.
- W4387346543 workType "article" @default.