Matches in SemOpenAlex for { <https://semopenalex.org/work/W4387400300> ?p ?o ?g. }
- W4387400300 endingPage "120700" @default.
- W4387400300 startingPage "120700" @default.
- W4387400300 abstract "The tremendous progress in sequencing technologies has made DNA sequencing routine for microbiome studies. Additionally, advances in mass spectrometric techniques have extended conventional proteomics into the field of microbial ecology. However, systematic studies that provide a better understanding of the complementary nature of these 'omics' approaches, particularly for complex environments such as wastewater treatment sludge, are urgently needed. Here, we describe a comparative metaomics study on aerobic granular sludge from three different wastewater treatment plants. For this, we employed metaproteomics, whole metagenome, and 16S rRNA amplicon sequencing to study the same granule material with uniform size. We furthermore compare the taxonomic profiles using the Genome Taxonomy Database (GTDB) to enhance the comparability between the different approaches. Though the major taxonomies were consistently identified in the different aerobic granular sludge samples, the taxonomic composition obtained by the different omics techniques varied significantly at the lower taxonomic levels, which impacts the interpretation of the nutrient removal processes. Nevertheless, as demonstrated by metaproteomics, the genera that were consistently identified in all techniques cover the majority of the protein biomass. In summary, the established metaomics data and the contig classification pipeline are publicly available, which provides a valuable resource for further studies on metabolic processes in aerobic granular sludge." @default.
- W4387400300 created "2023-10-07" @default.
- W4387400300 creator A5002417166 @default.
- W4387400300 creator A5004841296 @default.
- W4387400300 creator A5011112710 @default.
- W4387400300 creator A5011295284 @default.
- W4387400300 creator A5038450245 @default.
- W4387400300 creator A5038909223 @default.
- W4387400300 creator A5049300920 @default.
- W4387400300 creator A5053808048 @default.
- W4387400300 creator A5064903546 @default.
- W4387400300 creator A5067804185 @default.
- W4387400300 creator A5081556544 @default.
- W4387400300 date "2023-10-01" @default.
- W4387400300 modified "2023-10-07" @default.
- W4387400300 title "Metaproteomics, metagenomics and 16S rRNA sequencing provide different perspectives on the aerobic granular sludge microbiome" @default.
- W4387400300 cites W1528357204 @default.
- W4387400300 cites W1604029064 @default.
- W4387400300 cites W1864791524 @default.
- W4387400300 cites W1874606962 @default.
- W4387400300 cites W1947654056 @default.
- W4387400300 cites W1958025998 @default.
- W4387400300 cites W1974742732 @default.
- W4387400300 cites W1975304761 @default.
- W4387400300 cites W1991310235 @default.
- W4387400300 cites W2007153665 @default.
- W4387400300 cites W2009664200 @default.
- W4387400300 cites W2018853294 @default.
- W4387400300 cites W2020463980 @default.
- W4387400300 cites W2040374142 @default.
- W4387400300 cites W2045204781 @default.
- W4387400300 cites W2072970694 @default.
- W4387400300 cites W2086865963 @default.
- W4387400300 cites W2091333662 @default.
- W4387400300 cites W2110700297 @default.
- W4387400300 cites W2111281047 @default.
- W4387400300 cites W2112236099 @default.
- W4387400300 cites W2113416763 @default.
- W4387400300 cites W2127303481 @default.
- W4387400300 cites W2128777911 @default.
- W4387400300 cites W2131186249 @default.
- W4387400300 cites W2131271579 @default.
- W4387400300 cites W2135293770 @default.
- W4387400300 cites W2136879569 @default.
- W4387400300 cites W2139830782 @default.
- W4387400300 cites W2141637710 @default.
- W4387400300 cites W2142678031 @default.
- W4387400300 cites W2143485490 @default.
- W4387400300 cites W2145035782 @default.
- W4387400300 cites W2146331300 @default.
- W4387400300 cites W2147637673 @default.
- W4387400300 cites W2154026962 @default.
- W4387400300 cites W2156125289 @default.
- W4387400300 cites W2157107905 @default.
- W4387400300 cites W2158450371 @default.
- W4387400300 cites W2164254875 @default.
- W4387400300 cites W2170551349 @default.
- W4387400300 cites W2178043251 @default.
- W4387400300 cites W2207819727 @default.
- W4387400300 cites W2226974622 @default.
- W4387400300 cites W2291008509 @default.
- W4387400300 cites W2297705778 @default.
- W4387400300 cites W2474302342 @default.
- W4387400300 cites W2526956161 @default.
- W4387400300 cites W2546994975 @default.
- W4387400300 cites W2548485262 @default.
- W4387400300 cites W2559838906 @default.
- W4387400300 cites W2568729593 @default.
- W4387400300 cites W2599417231 @default.
- W4387400300 cites W2610121160 @default.
- W4387400300 cites W2617597277 @default.
- W4387400300 cites W2742647527 @default.
- W4387400300 cites W2751697887 @default.
- W4387400300 cites W2754579667 @default.
- W4387400300 cites W2765883183 @default.
- W4387400300 cites W2771880453 @default.
- W4387400300 cites W2773939681 @default.
- W4387400300 cites W2789627023 @default.
- W4387400300 cites W2794904294 @default.
- W4387400300 cites W2807194798 @default.
- W4387400300 cites W2888547803 @default.
- W4387400300 cites W2889019390 @default.
- W4387400300 cites W2907500629 @default.
- W4387400300 cites W2912939143 @default.
- W4387400300 cites W2944548763 @default.
- W4387400300 cites W2944891442 @default.
- W4387400300 cites W2948457945 @default.
- W4387400300 cites W2948743249 @default.
- W4387400300 cites W2950438666 @default.
- W4387400300 cites W2952886087 @default.
- W4387400300 cites W2953098897 @default.
- W4387400300 cites W2955843328 @default.
- W4387400300 cites W2963276645 @default.
- W4387400300 cites W2967193094 @default.
- W4387400300 cites W2973306397 @default.
- W4387400300 cites W2981413553 @default.
- W4387400300 cites W2990249310 @default.
- W4387400300 cites W2993895284 @default.