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- W4387490076 abstract "Abstract Summary Phylodynamic models link phylogenetic trees to biologically-relevant parameters such as speciation and extinction rates (macroevolution), effective population sizes and migration rates (ecology and phylogeography), and transmission and removal/recovery rates (epidemiology) to name a few. Being able to simulate phylogenetic trees and population dynamics under these models is the basis for (a) developing and testing of phylodynamic inference algorithms, (b) performing simulation studies which quantify the biases stemming from model-misspecification, and (c) performing so-called model adequacy assessments by simulating samples from the posterior predictive distribution. Here I introduce ReMASTER , a package for the BEAST 2 phylogenetic inference platform which provides a simple and efficient approach to specifying and simulating the phylogenetic trees and population dynamics arising from phylodynamic models. ReMASTER is a complete rewrite of an earlier package, MASTER, and boasts improved efficiency, ease of use, flexibility of model specification, and integration with BEAST 2. Availability and Implementation ReMASTER can be installed directly from the BEAST 2 package manager, and its documentation is available online at https://tgvaughan.github.io/remaster . ReMASTER is free software, and is distributed under version 3 of the GNU General Public License. The Java source code for ReMASTER is available from https://github.com/tgvaughan/remaster ." @default.
- W4387490076 created "2023-10-11" @default.
- W4387490076 creator A5088841943 @default.
- W4387490076 date "2023-10-10" @default.
- W4387490076 modified "2023-10-15" @default.
- W4387490076 title "ReMASTER: Improved phylodynamic simulation for BEAST 2.7" @default.
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- W4387490076 doi "https://doi.org/10.1101/2023.10.09.561485" @default.
- W4387490076 hasPublicationYear "2023" @default.
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