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- W4387655330 abstract "Assay for Transposase-Accessible Chromatin sequencing (ATAC-Seq) is a widely used technique to explore gene regulatory mechanisms. For most ATAC-Seq data from healthy and diseased tissues such as tumors, chromatin accessibility measurement represents a mixed signal from multiple cell types. In this work, we derive reliable chromatin accessibility marker peaks and reference profiles for all major cancer-relevant cell types. We then integrate these data into the EPIC deconvolution framework to quantify cell-type heterogeneity in bulk ATAC-Seq data. Our EPIC-ATAC tool accurately predicts non-malignant and malignant cell fractions in tumor samples. When applied to a breast cancer cohort, EPIC-ATAC accurately infers the immune contexture of the main breast cancer subtypes." @default.
- W4387655330 created "2023-10-16" @default.
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- W4387655330 date "2023-10-14" @default.
- W4387655330 modified "2023-10-16" @default.
- W4387655330 title "Robust estimation of cancer and immune cell-type proportions from bulk tumor ATAC-Seq data." @default.
- W4387655330 doi "https://doi.org/10.1101/2023.10.11.561826" @default.
- W4387655330 hasPublicationYear "2023" @default.
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