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- W4387661690 abstract "Detailed knowledge of the genetic variations in diverse crop populations forms the basis for genetic crop improvement and gene functional studies. In the present study, we analyzed a large rice population with a total of 10 548 accessions to construct a rice super-population variation map (RSPVM), consisting of 54 378 986 single nucleotide polymorphisms, 11 119 947 insertion/deletion mutations and 184 736 presence/absence variations . Assessment of variation detection efficiency for different population sizes revealed a sharp increase of all types of variation as the population size increased and a gradual saturation of that after the population size reached 10 000. Variant frequency analysis indicated that ∼90% of the obtained variants were rare, and would therefore likely be difficult to detect in a relatively small population. Among the rare variants, only 2.7% were predicted to be deleterious. Population structure, genetic diversity and gene functional polymorphism of this large population were evaluated based on different subsets of RSPVM, demonstrating the great potential of RSPVM for use in downstream applications. Our study provides both a rich genetic basis for understanding natural rice variations and a powerful tool for exploiting great potential of rare variants in future rice research, including population genetics and functional genomics." @default.
- W4387661690 created "2023-10-17" @default.
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- W4387661690 date "2023-10-16" @default.
- W4387661690 modified "2023-10-17" @default.
- W4387661690 title "A rice variation map derived from 10 548 rice accessions reveals the importance of rare variants" @default.
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- W4387661690 cites W2032700288 @default.
- W4387661690 cites W2035369190 @default.
- W4387661690 cites W2039973307 @default.
- W4387661690 cites W2042827641 @default.
- W4387661690 cites W2088486634 @default.
- W4387661690 cites W2091545495 @default.
- W4387661690 cites W2103441770 @default.
- W4387661690 cites W2105329815 @default.
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- W4387661690 cites W2107913703 @default.
- W4387661690 cites W2119444539 @default.
- W4387661690 cites W2131271579 @default.
- W4387661690 cites W2138098955 @default.
- W4387661690 cites W2149992227 @default.
- W4387661690 cites W2161633633 @default.
- W4387661690 cites W2165675499 @default.
- W4387661690 cites W2195303995 @default.
- W4387661690 cites W2462342490 @default.
- W4387661690 cites W2582800429 @default.
- W4387661690 cites W2606905102 @default.
- W4387661690 cites W2617947513 @default.
- W4387661690 cites W2789843538 @default.
- W4387661690 cites W2800434159 @default.
- W4387661690 cites W2884459730 @default.
- W4387661690 cites W2892143110 @default.
- W4387661690 cites W2905943205 @default.
- W4387661690 cites W2914117435 @default.
- W4387661690 cites W2924532017 @default.
- W4387661690 cites W2950121474 @default.
- W4387661690 cites W2952113787 @default.
- W4387661690 cites W2959872456 @default.
- W4387661690 cites W2985716268 @default.
- W4387661690 cites W3007365321 @default.
- W4387661690 cites W3013672006 @default.
- W4387661690 cites W3016274934 @default.
- W4387661690 cites W3025678672 @default.
- W4387661690 cites W3033513140 @default.
- W4387661690 cites W3039211591 @default.
- W4387661690 cites W3046401484 @default.
- W4387661690 cites W3087783406 @default.
- W4387661690 cites W3156458251 @default.
- W4387661690 cites W3165551447 @default.
- W4387661690 cites W3174336210 @default.
- W4387661690 cites W3174612256 @default.
- W4387661690 cites W3187415918 @default.
- W4387661690 cites W3197367468 @default.
- W4387661690 cites W3201708080 @default.
- W4387661690 cites W3207839499 @default.
- W4387661690 cites W4200338219 @default.
- W4387661690 cites W4200597270 @default.
- W4387661690 cites W4210276907 @default.
- W4387661690 cites W4225726081 @default.
- W4387661690 cites W4283160245 @default.
- W4387661690 cites W4285093403 @default.
- W4387661690 cites W4293866626 @default.
- W4387661690 cites W4376602535 @default.
- W4387661690 cites W4385621398 @default.