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- W9448944 abstract "Introduction: The main aim was to investigate Dukes B cancerprognosis using array comparative genomic hybridisation (aCGH).The cancers were typed for microsatellite instability (MSI), APC lossof heterozygosity (LOH) and ploidy. A secondary aim was theselection, on the basis of aCGH results, of potential colorectal cancergenes using In Situ Hybridisation (ISH). Sporadic adenomas werealso investigated with aCGH to investigate the timing ofchromosomal instability in tumourigenesis.Methods: Dukes B cancers collected in Oxford, Leeds and Harrowwere examined using aCGH based on a set of 3452 BAC clones at~1Mb spacing. MSI was assessed using BAT26 and D5S346.D5S346 gave LOH at the APC gene locus. Ploidy was assessedusing flow cytometry (FACS). From the aCGH data genes in regionsof copy number gain were chosen for ISH analysis.Results: 79 Dukes B cancers (43 good outcome, 36 bad outcome onthe basis of 5 year survival) were investigated with aCGH. The mostcommonly gained chromosomes across all cancers were 13, 20 and7, and the most commonly lost were 22, 18 and 14. Comparingsurvival groups; chromosome 6 was more often lost in cancersassociated with good outcome, chromosome 16 was more oftengained in microsatellite stable cancers associated with goodoutcome, and chromosome 22 more often gained in microsatellitestable cancers associated with poor outcome. Chromosome 13showed greater than single copy number change significantly moreoften in bad outcome cancers. Several new areas of small genomicgain and loss were detected. Four candidate genes were identified(CDX2, RHOA, FLT1 and ARHGEF1). None showed a relationshipwith outcome. Large scale chromosomal changes were found in 10of14 sporadic adenomas. Conclusions: Array CGH did identify some difference between goodand bad outcome Dukes B cancers. However on the basis of thisdata, the technique could not be used as a useful clinical tool topredict prognosis." @default.
- W9448944 created "2016-06-24" @default.
- W9448944 creator A5013638031 @default.
- W9448944 date "2011-07-28" @default.
- W9448944 modified "2023-09-27" @default.
- W9448944 title "Dukes stage B colorectal cancers analysed with array comparative genomic hybridisation" @default.
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