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- ECO_0005536 IAO_0000115 "A type of motif similarity evidence where the motif is represented by a position-specific frequency matrix (PSFM) that specifies the frequency of each base at each position of the motif, from which a position-specific scoring matrix (PSSM) can be derived under the framework of a log-likelihood ratio providing a scoring system based on the likelihood of a sequence given the motif, versus a genomic-frequency based null hypothesis." @default.
- ECO_0005536 IAO_0000234 "CollecTF" @default.
- ECO_0005536 normalizedInformationContent "92.730304365937428" @default.
- ECO_0005536 referenceCount "3" @default.
- ECO_0005536 created_by "snadendla" @default.
- ECO_0005536 creation_date "2015-10-09T15:04:35Z" @default.
- ECO_0005536 hasExactSynonym "PSSM motif search" @default.
- ECO_0005536 hasNarrowSynonym "PSSM" @default.
- ECO_0005536 hasOBONamespace "eco" @default.
- ECO_0005536 id "ECO:0005536" @default.
- ECO_0005536 type Class @default.
- ECO_0005536 comment "This technique is used to predict transcription factor binding sites in gene promoter regions by using a position weight matrix approach. (PMID:15604457)." @default.
- ECO_0005536 isDefinedBy eco.owl @default.
- ECO_0005536 label "position-specific scoring matrix motif search evidence" @default.
- ECO_0005536 subClassOf ECO_0000000 @default.
- ECO_0005536 subClassOf ECO_0000028 @default.
- ECO_0005536 subClassOf ECO_0000041 @default.
- ECO_0005536 subClassOf ECO_0000044 @default.
- ECO_0005536 subClassOf ECO_0000202 @default.
- ECO_0005536 subClassOf ECO_0005536 @default.
- ECO_0005536 subClassOf ECO_0007672 @default.
- ECO_0005536 category Entity @default.
- ECO_0005536 category EvidenceType @default.
- ECO_0005536 category InformationContentEntity @default.
- ECO_0005536 category NamedThing @default.