Matches in Ubergraph for { <http://purl.obolibrary.org/obo/SO_0002075> ?p ?o ?g. }
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- SO_0002075 IAO_0000115 "A sequence variant that intersects an incompletely annotated transcript." @default.
- SO_0002075 normalizedInformationContent "86.239998175184226" @default.
- SO_0002075 referenceCount "8" @default.
- SO_0002075 created_by "kareneilbeck" @default.
- SO_0002075 creation_date "2015-11-23T14:43:51Z" @default.
- SO_0002075 hasDbXref "http://annovar.openbioinformatics.org/en/latest/user-guide/gene/" @default.
- SO_0002075 hasExactSynonym "incomplete transcript variant" @default.
- SO_0002075 hasOBONamespace "sequence" @default.
- SO_0002075 id "SO:0002075" @default.
- SO_0002075 type Class @default.
- SO_0002075 comment "This term is to map to the ANNOVAR term 'ncRNA' http://annovar.openbioinformatics.org/en/latest/user-guide/gene/ . The description in the documentation (11/23/15) 'variant overlaps a transcript without coding annotation in the gene definition'. and this is further clarified in the document: ncRNA above refers to RNA without coding annotation. It does not mean that this is a RNA that will never be translated; it merely means that the user-selected gene annotation system was not able to give a coding sequence annotation. It could still code protein products and may have such annotations in future versions of gene annotation or in another gene annotation system. For example, BC039000 is regarded as ncRNA by ANNOVAR when using UCSC Known Gene annotation, but it is regarded as a protein-coding gene by ANNOVAR when using ENSEMBL annotation. It is further clarified in the comments section as: ncRNA does NOT mean conventional non-coding RNA. It means a RNA without complete coding sequence, and it can be a coding RNA that is annotated incorrectly by RefSeq or other gene definition systems." @default.
- SO_0002075 isDefinedBy so.owl @default.
- SO_0002075 label "incomplete_transcript_variant" @default.
- SO_0002075 subClassOf BFO_0000001 @default.
- SO_0002075 subClassOf BFO_0000002 @default.
- SO_0002075 subClassOf BFO_0000004 @default.
- SO_0002075 subClassOf BFO_0000040 @default.
- SO_0002075 subClassOf COB_0000006 @default.
- SO_0002075 subClassOf SO_0001060 @default.
- SO_0002075 subClassOf SO_0001537 @default.
- SO_0002075 subClassOf SO_0001564 @default.
- SO_0002075 subClassOf SO_0001576 @default.
- SO_0002075 subClassOf SO_0001878 @default.
- SO_0002075 subClassOf SO_0002075 @default.
- SO_0002075 category Entity @default.
- SO_0002075 category NamedThing @default.