Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_1> ?p ?o ?g. }
Showing items 1 to 24 of
24
with 100 items per page.
- CS202002013_1 cell_set_additional_aliases "Lamp5 Pax6" @default.
- CS202002013_1 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_1 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_1 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_1 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_1 cell_set_aligned_alias "Lamp5_4" @default.
- CS202002013_1 cell_set_label "RNAseq 001" @default.
- CS202002013_1 cell_set_preferred_alias "Lamp5-like Pax6" @default.
- CS202002013_1 node_metadata "{"cell_set_preferred_alias": "Lamp5-like Pax6", "original_label": "Lamp5 Pax6", "cell_set_label": "RNAseq 001", "cell_set_accession": "CS202002013_1", "cell_set_aligned_alias": "Lamp5_4", "cell_set_additional_aliases": "Lamp5 Pax6", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad|Zizhen Yao", "cell_set_alias_citation": "PMID:34616066|PMID:34616062|PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#DDACC9"}" @default.
- CS202002013_1 original_label "Lamp5 Pax6" @default.
- CS202002013_1 PCL_0010051 "Cell Type" @default.
- CS202002013_1 PCL_0010059 "CS202002013_1" @default.
- CS202002013_1 RO_0015003 CS202002013_126 @default.
- CS202002013_1 hasExactSynonym "Lamp5 Pax6" @default.
- CS202002013_1 hasExactSynonym "Lamp5_4" @default.
- CS202002013_1 hasRelatedSynonym "Lamp5_4" @default.
- CS202002013_1 type Bd12b25ec196bfb9fcf333adcb856935e @default.
- CS202002013_1 type Bfbb24ce60500346741b4847d7a0194b2 @default.
- CS202002013_1 type PCL_0010001 @default.
- CS202002013_1 type NamedIndividual @default.
- CS202002013_1 comment "In Mouse primary motor cortex (CCN202002013), Lamp5 Pax6 is a member of the Lamp5 subclass. Lamp5 Pax6 includes the Patch-seq and connectivity types Lamp5_4. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Pax6 and Pip5k1b (F-beta = 0.674), based on the NS Forest method of marker gene selection. Lamp5 Pax6 cells represent 4.86% of all Lamp5 cells collected in the snRNA-seq 10X v3 B dataset. Lamp5 Pax6 cells have an average of 4643 genes detected, which is 15 more than the average for all Lamp5 cells (4628). Lamp5 Pax6 cells have an average firing rate of 40 Hz, compared to 40.62 Hz for all Lamp5 cells recorded. Other distinguishing features include an input resistance of 275.53 MOhms (240.82 MOhms in all Lamp5 cells), and upstroke:downstroke ratio of 2.42 (3.13 for all Lamp5 cells). The most distinguishing morpholgical features of Lamp5 Pax6, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.07 vs. 0.2 average for all Lamp5 cells), axon total length (8027.25 vs. 10733.35 microns for all Lamp5 cells), dendrite total length (3467.49 vs. 2247.19 microns for all Lamp5 cells), and stems (5 vs. 7.47 for all Lamp5 cells)." @default.
- CS202002013_1 isDefinedBy cs202002013.owl @default.
- CS202002013_1 label "RNAseq 001 - CS202002013_1" @default.
- CS202002013_1 prefLabel "Lamp5-like Pax6" @default.