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- CS202002013_11 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_11 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_11 cell_set_label "RNAseq 011" @default.
- CS202002013_11 cell_set_preferred_alias "Sncg Calb1_1" @default.
- CS202002013_11 node_metadata "{"cell_set_preferred_alias": "Sncg Calb1_1", "original_label": "Sncg Calb1_1", "cell_set_label": "RNAseq 011", "cell_set_accession": "CS202002013_11", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#9611B6"}" @default.
- CS202002013_11 original_label "Sncg Calb1_1" @default.
- CS202002013_11 PCL_0010051 "Cell Type" @default.
- CS202002013_11 PCL_0010059 "CS202002013_11" @default.
- CS202002013_11 RO_0015003 CS202002013_136 @default.
- CS202002013_11 hasRelatedSynonym "Large CCK basket cell" @default.
- CS202002013_11 hasRelatedSynonym "Sncg-like_C3" @default.
- CS202002013_11 type B01ca0af3e71646a306b9833c593b6c65 @default.
- CS202002013_11 type Bdbe3f22149f21941ed8f5799ba312050 @default.
- CS202002013_11 type PCL_0010001 @default.
- CS202002013_11 type NamedIndividual @default.
- CS202002013_11 comment "In Mouse primary motor cortex (CCN202002013), Sncg Calb1_1 is a member of the Sncg subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Krt73 and Sln and Syt6 (F-beta = 0.578), based on the NS Forest method of marker gene selection. Sncg Calb1_1 cells represent 10.35% of all Sncg cells collected in the snRNA-seq 10X v3 B dataset. Sncg Calb1_1 cells have an average of 5498 genes detected, which is 435 more than the average for all Sncg cells (5063). Sncg Calb1_1 cells have an average firing rate of 30 Hz, compared to 30.38 Hz for all Sncg cells recorded. Other distinguishing features include an input resistance of 280.26 MOhms (368.39 MOhms in all Sncg cells), and upstroke:downstroke ratio of 2.36 (2.41 for all Sncg cells). The most distinguishing morpholgical features of Sncg Calb1_1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.1 vs. 0.3 average for all Sncg cells), axon total length (5622.73 vs. 7744.27 microns for all Sncg cells), dendrite total length (2156.6 vs. 2212.98 microns for all Sncg cells), and stems (5 vs. 5.83 for all Sncg cells)." @default.
- CS202002013_11 isDefinedBy cs202002013.owl @default.
- CS202002013_11 label "RNAseq 011 - CS202002013_11" @default.
- CS202002013_11 prefLabel "Sncg Calb1_1" @default.