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- CS202002013_125 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_125 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_125 cell_set_aligned_alias "Lamp5" @default.
- CS202002013_125 cell_set_label "RNAseq 001-008" @default.
- CS202002013_125 cell_set_preferred_alias "Lamp5-like" @default.
- CS202002013_125 node_metadata "{"cell_set_preferred_alias": "Lamp5-like", "original_label": "n9", "cell_set_label": "RNAseq 001-008", "cell_set_accession": "CS202002013_125", "cell_set_aligned_alias": "Lamp5", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_1|CS202002013_2|CS202002013_3|CS202002013_4|CS202002013_5|CS202002013_6|CS202002013_7|CS202002013_8", "cell_type_card": "Subclass", "cell_set_color": "#DA808C"}" @default.
- CS202002013_125 original_label "n9" @default.
- CS202002013_125 PCL_0010051 "Subclass" @default.
- CS202002013_125 PCL_0010059 "CS202002013_125" @default.
- CS202002013_125 RO_0015003 CS202002013_122 @default.
- CS202002013_125 RO_0015003 CS202002013_124 @default.
- CS202002013_125 hasExactSynonym "Lamp5" @default.
- CS202002013_125 type B5598b84a1cfcb8fc994d30e71b25de83 @default.
- CS202002013_125 type B6d713d999e431e1fcafdf4eb8b4ac849 @default.
- CS202002013_125 type PCL_0010001 @default.
- CS202002013_125 type NamedIndividual @default.
- CS202002013_125 comment "Lamp5 is: CGE/PoA-derived GABAergic subclass typically expressing Lamp5. In Mouse primary motor cortex (CCN202002013), Lamp5 has 8 child types: Lamp5 Pax6, Lamp5 Egln3_1, Lamp5 Egln3_2, Lamp5 Egln3_3, Lamp5 Pdlim5_1, Lamp5 Pdlim5_2, Lamp5 Slc35d3 and Lamp5 Lhx6. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Npy and Pde11a (F-beta = 0.793), based on the NS Forest method of marker gene selection. Lamp5 cells represent 20.15% of all GABAergic cells collected in the snRNA-seq 10X v3 B dataset. Lamp5 cells have an average of 4628 genes detected, which is 67 less than the average for all GABAergic cells (4695). The average normalized cortical depth of Lamp5 cells is 0.273, compared to an average of 0.478 for all GABAergic cells. Lamp5 cells have an average firing rate of 40.62 Hz, compared to 71.48 Hz for all GABAergic cells recorded. Other distinguishing features include an input resistance of 240.82 MOhms (262.76 MOhms in all GABAergic cells), and upstroke:downstroke ratio of 3.13 (1.91 for all GABAergic cells). The most distinguishing morpholgical features of Lamp5, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.2 vs. 0.4 average for all GABAergic cells), axon total length (10733.35 vs. 13796.3 microns for all GABAergic cells), dendrite total length (2247.19 vs. 2227.63 microns for all GABAergic cells), and stems (7.47 vs. 7.25 for all GABAergic cells)." @default.
- CS202002013_125 isDefinedBy cs202002013.owl @default.
- CS202002013_125 label "RNAseq 001-008 - CS202002013_125" @default.
- CS202002013_125 prefLabel "Lamp5-like" @default.