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- CS202002013_138 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_138 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_138 cell_set_aligned_alias "Vip" @default.
- CS202002013_138 cell_set_label "RNAseq 015-027" @default.
- CS202002013_138 cell_set_preferred_alias "Vip-like" @default.
- CS202002013_138 node_metadata "{"cell_set_preferred_alias": "Vip-like", "original_label": "n22", "cell_set_label": "RNAseq 015-027", "cell_set_accession": "CS202002013_138", "cell_set_aligned_alias": "Vip", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_15|CS202002013_16|CS202002013_17|CS202002013_18|CS202002013_19|CS202002013_20|CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25|CS202002013_26|CS202002013_27", "cell_type_card": "Subclass", "cell_set_color": "#B864CC"}" @default.
- CS202002013_138 original_label "n22" @default.
- CS202002013_138 PCL_0010051 "Subclass" @default.
- CS202002013_138 PCL_0010059 "CS202002013_138" @default.
- CS202002013_138 RO_0015003 CS202002013_132 @default.
- CS202002013_138 hasExactSynonym "Vip" @default.
- CS202002013_138 type B0dc5d8436fc101a6677e2df928a2b517 @default.
- CS202002013_138 type B34d22331ae1741343458bf5d1b1ecda5 @default.
- CS202002013_138 type PCL_0010001 @default.
- CS202002013_138 type NamedIndividual @default.
- CS202002013_138 comment "Vip is: CGE/PoA-derived GABAergic subclass typically expressing Vip. In Mouse primary motor cortex (CCN202002013), Vip has 13 child types: Vip Serpinf1_1, Vip Serpinf1_2, Vip Serpinf1_3, Vip Htr1f, Vip Gpc3, Vip C1ql1, Vip Mybpc1_2, Vip Mybpc1_1, Vip Chat_1, Vip Mybpc1_3, Vip Chat_2, Vip Igfbp6_1 and Vip Igfbp6_2. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Vip, based on the NS Forest method of marker gene selection (F-beta = 0.894). Vip cells represent 23.98% of all GABAergic cells collected in the snRNA-seq 10X v3 B dataset. Vip cells have an average of 3854 genes detected, which is 841 less than the average for all GABAergic cells (4695). The average normalized cortical depth of Vip cells is 0.379, compared to an average of 0.478 for all GABAergic cells. Vip cells have an average firing rate of 41.07 Hz, compared to 71.48 Hz for all GABAergic cells recorded. Other distinguishing features include an input resistance of 409.69 MOhms (262.76 MOhms in all GABAergic cells), and upstroke:downstroke ratio of 2.32 (1.91 for all GABAergic cells). The most distinguishing morpholgical features of Vip, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.36 vs. 0.4 average for all GABAergic cells), axon total length (5125.69 vs. 13796.3 microns for all GABAergic cells), dendrite total length (2222.79 vs. 2227.63 microns for all GABAergic cells), and stems (3.73 vs. 7.25 for all GABAergic cells)." @default.
- CS202002013_138 isDefinedBy cs202002013.owl @default.
- CS202002013_138 label "RNAseq 015-027 - CS202002013_138" @default.
- CS202002013_138 prefLabel "Vip-like" @default.