Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_14> ?p ?o ?g. }
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- CS202002013_14 cell_set_additional_aliases "Small CCK basket cell" @default.
- CS202002013_14 cell_set_alias_assignee "Federico Scala" @default.
- CS202002013_14 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_14 cell_set_alias_citation "PMID:33184512" @default.
- CS202002013_14 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_14 cell_set_label "RNAseq 014" @default.
- CS202002013_14 cell_set_preferred_alias "Vip Sncg" @default.
- CS202002013_14 node_metadata "{"cell_set_preferred_alias": "Vip Sncg", "original_label": "Vip Sncg", "cell_set_label": "RNAseq 014", "cell_set_accession": "CS202002013_14", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "Small CCK basket cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "PMID:34616066|PMID:33184512", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#AA4DB5"}" @default.
- CS202002013_14 original_label "Vip Sncg" @default.
- CS202002013_14 PCL_0010051 "Cell Type" @default.
- CS202002013_14 PCL_0010059 "CS202002013_14" @default.
- CS202002013_14 RO_0015003 CS202002013_137 @default.
- CS202002013_14 RO_0015003 CS202002013_240 @default.
- CS202002013_14 hasExactSynonym "Small CCK basket cell" @default.
- CS202002013_14 hasRelatedSynonym "Small CCK basket cell" @default.
- CS202002013_14 hasRelatedSynonym "Sncg-like_C1" @default.
- CS202002013_14 type B2abc8cf52b18793b560589ea293e2ea4 @default.
- CS202002013_14 type B6fcf98355cc127385029ce368573b5ba @default.
- CS202002013_14 type PCL_0010001 @default.
- CS202002013_14 type NamedIndividual @default.
- CS202002013_14 comment "In Mouse primary motor cortex (CCN202002013), Vip Sncg is a member of the Sncg subclass. Vip Sncg includes the Patch-seq and connectivity types Small CCK basket cell. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Crh and Nectin3 and Unc5b (F-beta = 0.578), based on the NS Forest method of marker gene selection. Vip Sncg cells represent 17.61% of all Sncg cells collected in the snRNA-seq 10X v3 B dataset. Vip Sncg cells have an average of 4195 genes detected, which is 868 less than the average for all Sncg cells (5063). Vip Sncg cells have an average firing rate of 35.14 Hz, compared to 30.38 Hz for all Sncg cells recorded. Other distinguishing features include an input resistance of 503.3 MOhms (368.39 MOhms in all Sncg cells), and upstroke:downstroke ratio of 2.47 (2.41 for all Sncg cells). The most distinguishing morpholgical features of Vip Sncg, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.09 vs. 0.3 average for all Sncg cells), axon total length (4545.89 vs. 7744.27 microns for all Sncg cells), dendrite total length (1740.72 vs. 2212.98 microns for all Sncg cells), and stems (5.17 vs. 5.83 for all Sncg cells)." @default.
- CS202002013_14 isDefinedBy cs202002013.owl @default.
- CS202002013_14 label "RNAseq 014 - CS202002013_14" @default.
- CS202002013_14 prefLabel "Vip Sncg" @default.