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- CS202002013_16 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_16 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_16 cell_set_label "RNAseq 016" @default.
- CS202002013_16 cell_set_preferred_alias "Vip Serpinf1_2" @default.
- CS202002013_16 node_metadata "{"cell_set_preferred_alias": "Vip Serpinf1_2", "original_label": "Vip Serpinf1_2", "cell_set_label": "RNAseq 016", "cell_set_accession": "CS202002013_16", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#AB1DFF"}" @default.
- CS202002013_16 original_label "Vip Serpinf1_2" @default.
- CS202002013_16 PCL_0010051 "Cell Type" @default.
- CS202002013_16 PCL_0010059 "CS202002013_16" @default.
- CS202002013_16 RO_0015003 CS202002013_140 @default.
- CS202002013_16 RO_0015003 CS202002013_240 @default.
- CS202002013_16 hasRelatedSynonym "L5/6 CCK cell" @default.
- CS202002013_16 hasRelatedSynonym "Sncg-like_C1" @default.
- CS202002013_16 type B226eb89a1b8ab97b3850c6e0fa028d6e @default.
- CS202002013_16 type Bf61d57d41f396fafb063aa1512bdadfb @default.
- CS202002013_16 type PCL_0010001 @default.
- CS202002013_16 type NamedIndividual @default.
- CS202002013_16 comment "In Mouse primary motor cortex (CCN202002013), Vip Serpinf1_2 is a member of the Vip subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Col14a1 and Nov and Pbx3 (F-beta = 0.592), based on the NS Forest method of marker gene selection. Vip Serpinf1_2 cells represent 4.99% of all Vip cells collected in the snRNA-seq 10X v3 B dataset. Vip Serpinf1_2 cells have an average of 4648 genes detected, which is 794 more than the average for all Vip cells (3854). Vip Serpinf1_2 cells have an average firing rate of 40 Hz, compared to 41.07 Hz for all Vip cells recorded. Other distinguishing features include an input resistance of 320.86 MOhms (409.69 MOhms in all Vip cells), and upstroke:downstroke ratio of 2.36 (2.32 for all Vip cells). The most distinguishing morpholgical features of Vip Serpinf1_2, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.85 vs. 0.36 average for all Vip cells), axon total length (20830.1 vs. 5125.69 microns for all Vip cells), dendrite total length (1719.4 vs. 2222.79 microns for all Vip cells), and stems (6 vs. 3.73 for all Vip cells)." @default.
- CS202002013_16 isDefinedBy cs202002013.owl @default.
- CS202002013_16 label "RNAseq 016 - CS202002013_16" @default.
- CS202002013_16 prefLabel "Vip Serpinf1_2" @default.