Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_179> ?p ?o ?g. }
Showing items 1 to 19 of
19
with 100 items per page.
- CS202002013_179 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_179 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_179 cell_set_aligned_alias "Neuronal: Glutamatergic" @default.
- CS202002013_179 cell_set_label "RNAseq 058-088" @default.
- CS202002013_179 cell_set_preferred_alias "Glutamatergic" @default.
- CS202002013_179 node_metadata "{"cell_set_preferred_alias": "Glutamatergic", "original_label": "n63", "cell_set_label": "RNAseq 058-088", "cell_set_accession": "CS202002013_179", "cell_set_aligned_alias": "Neuronal: Glutamatergic", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88", "cell_type_card": "Class", "cell_set_color": "#00ADEE"}" @default.
- CS202002013_179 original_label "n63" @default.
- CS202002013_179 PCL_0010051 "Class" @default.
- CS202002013_179 PCL_0010059 "CS202002013_179" @default.
- CS202002013_179 RO_0015003 CS202002013_122 @default.
- CS202002013_179 hasExactSynonym "Neuronal: Glutamatergic" @default.
- CS202002013_179 hasRelatedSynonym "Excitatory neurons" @default.
- CS202002013_179 hasRelatedSynonym "Neuronal: Glutamatergic" @default.
- CS202002013_179 type PCL_0010001 @default.
- CS202002013_179 type NamedIndividual @default.
- CS202002013_179 comment "Glutamatergic is: Neurons that use glutamate as a neurotransmitter and exert an excitatory post-synaptic effect. The minimal set of markers required to distinguish this cell class from other cell classes in the primary motor cortex is Sv2b and Arpp21 (F-beta = 0.988), based on the NS Forest method of marker gene selection. Glutamatergic cells represent 71.92% of all cells collected in the snRNA-seq 10X v3 B dataset. Glutamatergic cells have an average of 5113 genes detected, which is 832 more than the average for allcells (4281). The average normalized cortical depth of Glutamatergic cells is 0.527, compared to an average of 0.539 for all cells. Glutamatergic cells have an average firing rate of 26.59 Hz, compared to 56.42 Hz for all neurons recorded. Other distinguishing features include an input resistance of 156.52 MOhms (227.12 MOhms in all neurons), and upstroke:downstroke ratio of 4.03 (2.62 for all neurons). The most distinguishing morpholgical features of Glutamatergic, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.54 vs. 0.46 average for all neurons), dendrite total length (4488.4 vs. 3182.34 microns for all neurons), and stems (7.25 vs. 6.4 for all neurons)." @default.
- CS202002013_179 isDefinedBy cs202002013.owl @default.
- CS202002013_179 label "RNAseq 058-088 - CS202002013_179" @default.
- CS202002013_179 prefLabel "Glutamatergic" @default.