Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_18> ?p ?o ?g. }
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- CS202002013_18 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_18 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_18 cell_set_label "RNAseq 018" @default.
- CS202002013_18 cell_set_preferred_alias "Vip Htr1f" @default.
- CS202002013_18 node_metadata "{"cell_set_preferred_alias": "Vip Htr1f", "original_label": "Vip Htr1f", "cell_set_label": "RNAseq 018", "cell_set_accession": "CS202002013_18", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#FF4DC1"}" @default.
- CS202002013_18 original_label "Vip Htr1f" @default.
- CS202002013_18 PCL_0010051 "Cell Type" @default.
- CS202002013_18 PCL_0010059 "CS202002013_18" @default.
- CS202002013_18 RO_0015003 CS202002013_143 @default.
- CS202002013_18 RO_0015003 CS202002013_242 @default.
- CS202002013_18 hasRelatedSynonym "L5 VIP cell" @default.
- CS202002013_18 hasRelatedSynonym "Vip-like_C2" @default.
- CS202002013_18 type B0f008d1e382e4b3d74940f60ce6ef3b2 @default.
- CS202002013_18 type B5ff18d6e007eb90da4fd1d69bdf1cf33 @default.
- CS202002013_18 type PCL_0010001 @default.
- CS202002013_18 type NamedIndividual @default.
- CS202002013_18 comment "In Mouse primary motor cortex (CCN202002013), Vip Htr1f is a member of the Vip subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Nov and Vip and Vwc2l (F-beta = 0.675), based on the NS Forest method of marker gene selection. Vip Htr1f cells represent 11.32% of all Vip cells collected in the snRNA-seq 10X v3 B dataset. Vip Htr1f cells have an average of 3729 genes detected, which is 125 less than the average for all Vip cells (3854). Vip Htr1f cells have an average firing rate of 37.67 Hz, compared to 41.07 Hz for all Vip cells recorded. Other distinguishing features include an input resistance of 481.48 MOhms (409.69 MOhms in all Vip cells), and upstroke:downstroke ratio of 2.53 (2.32 for all Vip cells). The most distinguishing morpholgical features of Vip Htr1f, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.23 vs. 0.36 average for all Vip cells), axon total length (3765.89 vs. 5125.69 microns for all Vip cells), dendrite total length (1839.11 vs. 2222.79 microns for all Vip cells), and stems (3.75 vs. 3.73 for all Vip cells)." @default.
- CS202002013_18 isDefinedBy cs202002013.owl @default.
- CS202002013_18 label "RNAseq 018 - CS202002013_18" @default.
- CS202002013_18 prefLabel "Vip Htr1f" @default.