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- CS202002013_183 cell_set_additional_aliases "L2/3 IT" @default.
- CS202002013_183 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_183 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_183 cell_set_aligned_alias "L2/3 IT" @default.
- CS202002013_183 cell_set_label "RNAseq 058-060" @default.
- CS202002013_183 cell_set_preferred_alias "L2/3 IT" @default.
- CS202002013_183 node_metadata "{"cell_set_preferred_alias": "L2/3 IT", "original_label": "n67", "cell_set_label": "RNAseq 058-060", "cell_set_accession": "CS202002013_183", "cell_set_aligned_alias": "L2/3 IT", "cell_set_additional_aliases": "L2/3 IT", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_58|CS202002013_59|CS202002013_60", "cell_type_card": "Subclass", "cell_set_color": "#C4EC04"}" @default.
- CS202002013_183 original_label "n67" @default.
- CS202002013_183 PCL_0010051 "Subclass" @default.
- CS202002013_183 PCL_0010059 "CS202002013_183" @default.
- CS202002013_183 RO_0015003 CS202002013_182 @default.
- CS202002013_183 hasExactSynonym "L2/3 IT" @default.
- CS202002013_183 type Bba750958b6dc3e0c475e40f34c0766d8 @default.
- CS202002013_183 type Bbd3d341f0632d97e246742954aa93c85 @default.
- CS202002013_183 type PCL_0010001 @default.
- CS202002013_183 type NamedIndividual @default.
- CS202002013_183 comment "L2/3 IT is: Layer 2/3 intratelencephalic-projecting. In Mouse primary motor cortex (CCN202002013), L2/3 IT has 3 child types: L2/3 IT_1, L2/3 IT_2 and L2/3 IT_3. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Calb1 and Rasgrf2 (F-beta = 0.842), based on the NS Forest method of marker gene selection. L2/3 IT cells represent 20.93% of all Glutamatergic cells collected in the snRNA-seq 10X v3 B dataset. L2/3 IT cells have an average of 5231 genes detected, which is 118 more than the average for all Glutamatergic cells (5113). The average normalized cortical depth of L2/3 IT cells is 0.204, compared to an average of 0.527 for all Glutamatergic cells. L2/3 IT cells have an average firing rate of 17.34 Hz, compared to 26.59 Hz for all Glutamatergic cells recorded. Other distinguishing features include an input resistance of 91.42 MOhms (156.52 MOhms in all Glutamatergic cells), and upstroke:downstroke ratio of 4.49 (4.03 for all Glutamatergic cells). The most distinguishing morpholgical features of L2/3 IT, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.17 vs. 0.54 average for all Glutamatergic cells), dendrite total length (4647.41 vs. 4488.4 microns for all Glutamatergic cells), and stems (7.63 vs. 7.25 for all Glutamatergic cells)." @default.
- CS202002013_183 isDefinedBy cs202002013.owl @default.
- CS202002013_183 label "RNAseq 058-060 - CS202002013_183" @default.
- CS202002013_183 prefLabel "L2/3 IT" @default.