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- CS202002013_189 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_189 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_189 cell_set_aligned_alias "L5 IT" @default.
- CS202002013_189 cell_set_label "RNAseq 063-066" @default.
- CS202002013_189 cell_set_preferred_alias "L5 IT" @default.
- CS202002013_189 node_metadata "{"cell_set_preferred_alias": "L5 IT", "original_label": "n73", "cell_set_label": "RNAseq 063-066", "cell_set_accession": "CS202002013_189", "cell_set_aligned_alias": "L5 IT", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66", "cell_type_card": "Subclass", "cell_set_color": "#50B2AD"}" @default.
- CS202002013_189 original_label "n73" @default.
- CS202002013_189 PCL_0010051 "Subclass" @default.
- CS202002013_189 PCL_0010059 "CS202002013_189" @default.
- CS202002013_189 RO_0015003 CS202002013_187 @default.
- CS202002013_189 hasExactSynonym "L5 IT" @default.
- CS202002013_189 type Bd046d2bba8ed2399ce8f5065c425bde6 @default.
- CS202002013_189 type Bee1a73a3eaa58b5d2fd14799b9891a26 @default.
- CS202002013_189 type PCL_0010001 @default.
- CS202002013_189 type NamedIndividual @default.
- CS202002013_189 comment "L5 IT is: Layer 5 intratelencephalic-projecting. In Mouse primary motor cortex (CCN202002013), L5 IT has 4 child types: L5 IT_1, L5 IT_2, L5 IT_3 and L5 IT_4. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Cdh12 and Pdzrn3 and St6galnac5 (F-beta = 0.8), based on the NS Forest method of marker gene selection. L5 IT cells represent 12.54% of all Glutamatergic cells collected in the snRNA-seq 10X v3 B dataset. L5 IT cells have an average of 5502 genes detected, which is 389 more than the average for all Glutamatergic cells (5113). The average normalized cortical depth of L5 IT cells is 0.597, compared to an average of 0.527 for all Glutamatergic cells. L5 IT cells have an average firing rate of 27.88 Hz, compared to 26.59 Hz for all Glutamatergic cells recorded. Other distinguishing features include an input resistance of 145.64 MOhms (156.52 MOhms in all Glutamatergic cells), and upstroke:downstroke ratio of 3.96 (4.03 for all Glutamatergic cells). The most distinguishing morpholgical features of L5 IT, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.47 vs. 0.54 average for all Glutamatergic cells), dendrite total length (6248.91 vs. 4488.4 microns for all Glutamatergic cells), and stems (7.98 vs. 7.25 for all Glutamatergic cells)." @default.
- CS202002013_189 isDefinedBy cs202002013.owl @default.
- CS202002013_189 label "RNAseq 063-066 - CS202002013_189" @default.
- CS202002013_189 prefLabel "L5 IT" @default.