Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_19> ?p ?o ?g. }
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- CS202002013_19 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_19 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_19 cell_set_label "RNAseq 019" @default.
- CS202002013_19 cell_set_preferred_alias "Vip Gpc3" @default.
- CS202002013_19 node_metadata "{"cell_set_preferred_alias": "Vip Gpc3", "original_label": "Vip Gpc3", "cell_set_label": "RNAseq 019", "cell_set_accession": "CS202002013_19", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#B09FFF"}" @default.
- CS202002013_19 original_label "Vip Gpc3" @default.
- CS202002013_19 PCL_0010051 "Cell Type" @default.
- CS202002013_19 PCL_0010059 "CS202002013_19" @default.
- CS202002013_19 RO_0015003 CS202002013_144 @default.
- CS202002013_19 RO_0015003 CS202002013_241 @default.
- CS202002013_19 hasRelatedSynonym "L5 VIP cell" @default.
- CS202002013_19 hasRelatedSynonym "Vip-like_C3" @default.
- CS202002013_19 type B3814d524fbae1c9202c5e1fce374acbc @default.
- CS202002013_19 type Bd56af07f4930852e217bb22deac4ce6f @default.
- CS202002013_19 type PCL_0010001 @default.
- CS202002013_19 type NamedIndividual @default.
- CS202002013_19 comment "In Mouse primary motor cortex (CCN202002013), Vip Gpc3 is a member of the Vip subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Pbx3 and Pde3a and Vip (F-beta = 0.75), based on the NS Forest method of marker gene selection. Vip Gpc3 cells represent 8.86% of all Vip cells collected in the snRNA-seq 10X v3 B dataset. Vip Gpc3 cells have an average of 4005 genes detected, which is 151 more than the average for all Vip cells (3854). Vip Gpc3 cells have an average firing rate of 34.65 Hz, compared to 41.07 Hz for all Vip cells recorded. Other distinguishing features include an input resistance of 299.64 MOhms (409.69 MOhms in all Vip cells), and upstroke:downstroke ratio of 2.48 (2.32 for all Vip cells). The most distinguishing morpholgical features of Vip Gpc3, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.62 vs. 0.36 average for all Vip cells), axon total length (5081.95 vs. 5125.69 microns for all Vip cells), dendrite total length (2273.99 vs. 2222.79 microns for all Vip cells), and stems (4 vs. 3.73 for all Vip cells)." @default.
- CS202002013_19 isDefinedBy cs202002013.owl @default.
- CS202002013_19 label "RNAseq 019 - CS202002013_19" @default.
- CS202002013_19 prefLabel "Vip Gpc3" @default.