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- CS202002013_192 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_192 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_192 cell_set_aligned_alias "L6 IT" @default.
- CS202002013_192 cell_set_label "RNAseq 067-068" @default.
- CS202002013_192 cell_set_preferred_alias "L6 IT" @default.
- CS202002013_192 node_metadata "{"cell_set_preferred_alias": "L6 IT", "original_label": "n76", "cell_set_label": "RNAseq 067-068", "cell_set_accession": "CS202002013_192", "cell_set_aligned_alias": "L6 IT", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_67|CS202002013_68", "cell_type_card": "Subclass", "cell_set_color": "#A19922"}" @default.
- CS202002013_192 original_label "n76" @default.
- CS202002013_192 PCL_0010051 "Subclass" @default.
- CS202002013_192 PCL_0010059 "CS202002013_192" @default.
- CS202002013_192 RO_0015003 CS202002013_186 @default.
- CS202002013_192 hasExactSynonym "L6 IT" @default.
- CS202002013_192 type B57b48b15a056e1e86e8c37fc46d22024 @default.
- CS202002013_192 type B74219e1ce94b5c3df252ecd8935e8a4a @default.
- CS202002013_192 type PCL_0010001 @default.
- CS202002013_192 type NamedIndividual @default.
- CS202002013_192 comment "L6 IT is: Layer 6 intratelencephalic-projecting. In Mouse primary motor cortex (CCN202002013), L6 IT has 2 child types: L6 IT_1 and L6 IT_2. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Bmpr1b and Il1rapl2 and Sulf1 (F-beta = 0.8), based on the NS Forest method of marker gene selection. L6 IT cells represent 6.01% of all Glutamatergic cells collected in the snRNA-seq 10X v3 B dataset. L6 IT cells have an average of 5205 genes detected, which is 92 more than the average for all Glutamatergic cells (5113). The average normalized cortical depth of L6 IT cells is 0.831, compared to an average of 0.527 for all Glutamatergic cells. L6 IT cells have an average firing rate of 35.14 Hz, compared to 26.59 Hz for all Glutamatergic cells recorded. Other distinguishing features include an input resistance of 185.91 MOhms (156.52 MOhms in all Glutamatergic cells), and upstroke:downstroke ratio of 4.38 (4.03 for all Glutamatergic cells). The most distinguishing morpholgical features of L6 IT, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.81 vs. 0.54 average for all Glutamatergic cells), dendrite total length (3273.05 vs. 4488.4 microns for all Glutamatergic cells), and stems (6.11 vs. 7.25 for all Glutamatergic cells)." @default.
- CS202002013_192 isDefinedBy cs202002013.owl @default.
- CS202002013_192 label "RNAseq 067-068 - CS202002013_192" @default.
- CS202002013_192 prefLabel "L6 IT" @default.