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- CS202002013_193 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_193 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_193 cell_set_aligned_alias "L5 ET" @default.
- CS202002013_193 cell_set_label "RNAseq 070-073" @default.
- CS202002013_193 cell_set_preferred_alias "L5 ET" @default.
- CS202002013_193 node_metadata "{"cell_set_preferred_alias": "L5 ET", "original_label": "n77", "cell_set_label": "RNAseq 070-073", "cell_set_accession": "CS202002013_193", "cell_set_aligned_alias": "L5 ET", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73", "cell_type_card": "Subclass", "cell_set_color": "#0D5B78"}" @default.
- CS202002013_193 original_label "n77" @default.
- CS202002013_193 PCL_0010051 "Subclass" @default.
- CS202002013_193 PCL_0010059 "CS202002013_193" @default.
- CS202002013_193 RO_0015003 CS202002013_181 @default.
- CS202002013_193 RO_0015003 CS202002013_234 @default.
- CS202002013_193 hasExactSynonym "L5 ET" @default.
- CS202002013_193 hasRelatedSynonym "Burst-firing layer 5 neurons" @default.
- CS202002013_193 hasRelatedSynonym "L5b neurons" @default.
- CS202002013_193 hasRelatedSynonym "Pyramidal tract (PT) neurons" @default.
- CS202002013_193 hasRelatedSynonym "Pyramidal tract-like (PT-l)" @default.
- CS202002013_193 hasRelatedSynonym "Subcerebral projection neurons (SCPN)" @default.
- CS202002013_193 hasRelatedSynonym "Thick-tufted layer 5 pyramidal neurons" @default.
- CS202002013_193 hasRelatedSynonym "Thick-tufted layer 5 neurons (TTL5)" @default.
- CS202002013_193 type B2cc65b8ac77f0ba6a775c7b7a72746f7 @default.
- CS202002013_193 type B9fa6ea240c516228410091bd57ff3369 @default.
- CS202002013_193 type PCL_0010001 @default.
- CS202002013_193 type NamedIndividual @default.
- CS202002013_193 comment "L5 ET is: Layer 5 extratelencephalic-projecting; also known as CF (corticofugal), PT (pyramidal tract), or SC (subcortical). In Mouse primary motor cortex (CCN202002013), L5 ET has 4 child types: L5 ET_1, L5 ET_2, L5 ET_3 and L5 ET_4. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Gm2164 and Npr3 (F-beta = 0.888), based on the NS Forest method of marker gene selection. L5 ET cells represent 2.81% of all Glutamatergic cells collected in the snRNA-seq 10X v3 B dataset. L5 ET cells have an average of 6580 genes detected, which is 1467 more than the average for all Glutamatergic cells (5113). The average normalized cortical depth of L5 ET cells is 0.619, compared to an average of 0.527 for all Glutamatergic cells. L5 ET cells have an average firing rate of 30.92 Hz, compared to 26.59 Hz for all Glutamatergic cells recorded. Other distinguishing features include an input resistance of 88.63 MOhms (156.52 MOhms in all Glutamatergic cells), and upstroke:downstroke ratio of 3.54 (4.03 for all Glutamatergic cells). The most distinguishing morpholgical features of L5 ET, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.48 vs. 0.54 average for all Glutamatergic cells), dendrite total length (7991.53 vs. 4488.4 microns for all Glutamatergic cells), and stems (8.56 vs. 7.25 for all Glutamatergic cells)." @default.
- CS202002013_193 isDefinedBy cs202002013.owl @default.
- CS202002013_193 label "RNAseq 070-073 - CS202002013_193" @default.
- CS202002013_193 prefLabel "L5 ET" @default.