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- CS202002013_197 cell_set_additional_aliases "Corticothalamic" @default.
- CS202002013_197 cell_set_additional_aliases "VAL/VM Projecting" @default.
- CS202002013_197 cell_set_alias_assignee "Federico Scala" @default.
- CS202002013_197 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_197 cell_set_alias_citation "PMID:33184512" @default.
- CS202002013_197 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_197 cell_set_aligned_alias "L6 CT" @default.
- CS202002013_197 cell_set_label "RNAseq 074-080" @default.
- CS202002013_197 cell_set_preferred_alias "L6 CT" @default.
- CS202002013_197 node_metadata "{"cell_set_preferred_alias": "L6 CT", "original_label": "n81", "cell_set_label": "RNAseq 074-080", "cell_set_accession": "CS202002013_197", "cell_set_aligned_alias": "L6 CT", "cell_set_additional_aliases": "Corticothalamic|VAL/VM Projecting", "cell_set_alias_assignee": "Zizhen Yao|||Federico Scala", "cell_set_alias_citation": "PMID:34616066|||PMID:33184512", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80", "cell_type_card": "Subclass", "cell_set_color": "#2D8CB8"}" @default.
- CS202002013_197 original_label "n81" @default.
- CS202002013_197 PCL_0010051 "Subclass" @default.
- CS202002013_197 PCL_0010059 "CS202002013_197" @default.
- CS202002013_197 RO_0015003 CS202002013_196 @default.
- CS202002013_197 hasExactSynonym "Corticothalamic" @default.
- CS202002013_197 hasExactSynonym "L6 CT" @default.
- CS202002013_197 hasExactSynonym "VAL/VM Projecting" @default.
- CS202002013_197 hasRelatedSynonym "Corticothalamic" @default.
- CS202002013_197 hasRelatedSynonym "VAL/VM Projecting" @default.
- CS202002013_197 type B03f3081fbbe38287d52d49187b2dec28 @default.
- CS202002013_197 type B9aaf1fb71be7fdafe308e345be959a9b @default.
- CS202002013_197 type PCL_0010001 @default.
- CS202002013_197 type NamedIndividual @default.
- CS202002013_197 comment "L6 CT is: Layer 6 corticothalamic. In Mouse primary motor cortex (CCN202002013), L6 CT has 7 child types: L5/6 NP CT, L6 CT Gpr139, L6 CT Cpa6, L6 CT Grp, L6 CT Pou3f2, L6 CT Kit_1 and L6 CT Kit_2. L6 CT includes the Patch-seq and connectivity types Corticothalamic|VAL/VM Projecting. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Foxp2 and Hs3st4 (F-beta = 0.914), based on the NS Forest method of marker gene selection. L6 CT cells represent 21.82% of all Glutamatergic cells collected in the snRNA-seq 10X v3 B dataset. L6 CT cells have an average of 4857 genes detected, which is 256 less than the average for all Glutamatergic cells (5113). The average normalized cortical depth of L6 CT cells is 0.856, compared to an average of 0.527 for all Glutamatergic cells. L6 CT cells have an average firing rate of 27.46 Hz, compared to 26.59 Hz for all Glutamatergic cells recorded. Other distinguishing features include an input resistance of 204.84 MOhms (156.52 MOhms in all Glutamatergic cells), and upstroke:downstroke ratio of 3.41 (4.03 for all Glutamatergic cells). The most distinguishing morpholgical features of L6 CT, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.8 vs. 0.54 average for all Glutamatergic cells), dendrite total length (2884.47 vs. 4488.4 microns for all Glutamatergic cells), and stems (6.97 vs. 7.25 for all Glutamatergic cells)." @default.
- CS202002013_197 isDefinedBy cs202002013.owl @default.
- CS202002013_197 label "RNAseq 074-080 - CS202002013_197" @default.
- CS202002013_197 prefLabel "L6 CT" @default.