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- CS202002013_2 cell_set_additional_aliases "Alpha7 cell" @default.
- CS202002013_2 cell_set_alias_assignee "Federico Scala" @default.
- CS202002013_2 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_2 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_2 cell_set_alias_citation "PMID:33184512" @default.
- CS202002013_2 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_2 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_2 cell_set_aligned_alias "Sncg_4" @default.
- CS202002013_2 cell_set_label "RNAseq 002" @default.
- CS202002013_2 cell_set_preferred_alias "Lamp5-like Egln3_1" @default.
- CS202002013_2 node_metadata "{"cell_set_preferred_alias": "Lamp5-like Egln3_1", "original_label": "Lamp5 Egln3_1", "cell_set_label": "RNAseq 002", "cell_set_accession": "CS202002013_2", "cell_set_aligned_alias": "Sncg_4", "cell_set_additional_aliases": "Alpha7 cell", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "PMID:34616066|PMID:34616062|PMID:33184512", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#FF88AD"}" @default.
- CS202002013_2 original_label "Lamp5 Egln3_1" @default.
- CS202002013_2 PCL_0010051 "Cell Type" @default.
- CS202002013_2 PCL_0010059 "CS202002013_2" @default.
- CS202002013_2 RO_0015003 CS202002013_127 @default.
- CS202002013_2 hasExactSynonym "Alpha7 cell" @default.
- CS202002013_2 hasExactSynonym "Sncg_4" @default.
- CS202002013_2 hasRelatedSynonym "Alpha7 cell" @default.
- CS202002013_2 hasRelatedSynonym "Sncg_4" @default.
- CS202002013_2 type B5023da5d3a9d7a1d3a732459af85d1f3 @default.
- CS202002013_2 type B9838339db157bc19d24654e178dcfe50 @default.
- CS202002013_2 type PCL_0010001 @default.
- CS202002013_2 type NamedIndividual @default.
- CS202002013_2 comment "In Mouse primary motor cortex (CCN202002013), Lamp5 Egln3_1 is a member of the Lamp5 subclass. Lamp5 Egln3_1 includes the Patch-seq and connectivity types Sncg_4|Alpha7 cell. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Chrna7 and Fam19a1 and Fbn2 (F-beta = 0.691), based on the NS Forest method of marker gene selection. Lamp5 Egln3_1 cells represent 4.29% of all Lamp5 cells collected in the snRNA-seq 10X v3 B dataset. Lamp5 Egln3_1 cells have an average of 4654 genes detected, which is 26 more than the average for all Lamp5 cells (4628). Lamp5 Egln3_1 cells have an average firing rate of 35.17 Hz, compared to 40.62 Hz for all Lamp5 cells recorded. Other distinguishing features include an input resistance of 304.55 MOhms (240.82 MOhms in all Lamp5 cells), and upstroke:downstroke ratio of 2.47 (3.13 for all Lamp5 cells). The most distinguishing morpholgical features of Lamp5 Egln3_1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.07 vs. 0.2 average for all Lamp5 cells), axon total length (11473 vs. 10733.35 microns for all Lamp5 cells), dendrite total length (2291.86 vs. 2247.19 microns for all Lamp5 cells), and stems (5 vs. 7.47 for all Lamp5 cells)." @default.
- CS202002013_2 isDefinedBy cs202002013.owl @default.
- CS202002013_2 label "RNAseq 002 - CS202002013_2" @default.
- CS202002013_2 prefLabel "Lamp5-like Egln3_1" @default.