Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_20> ?p ?o ?g. }
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- CS202002013_20 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_20 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_20 cell_set_label "RNAseq 020" @default.
- CS202002013_20 cell_set_preferred_alias "Vip C1ql1" @default.
- CS202002013_20 node_metadata "{"cell_set_preferred_alias": "Vip C1ql1", "original_label": "Vip C1ql1", "cell_set_label": "RNAseq 020", "cell_set_accession": "CS202002013_20", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#BD3D9A"}" @default.
- CS202002013_20 original_label "Vip C1ql1" @default.
- CS202002013_20 PCL_0010051 "Cell Type" @default.
- CS202002013_20 PCL_0010059 "CS202002013_20" @default.
- CS202002013_20 RO_0015003 CS202002013_144 @default.
- CS202002013_20 RO_0015003 CS202002013_242 @default.
- CS202002013_20 hasRelatedSynonym "L5 VIP cell" @default.
- CS202002013_20 hasRelatedSynonym "Vip-like_C2" @default.
- CS202002013_20 type B3cc000033eef26078fa29825c567ae88 @default.
- CS202002013_20 type Bc919803304dea3df71be1ec923c16e2c @default.
- CS202002013_20 type PCL_0010001 @default.
- CS202002013_20 type NamedIndividual @default.
- CS202002013_20 comment "In Mouse primary motor cortex (CCN202002013), Vip C1ql1 is a member of the Vip subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Bmper and Btbd11 and Crh and Vip (F-beta = 0.556), based on the NS Forest method of marker gene selection. Vip C1ql1 cells represent 10.73% of all Vip cells collected in the snRNA-seq 10X v3 B dataset. Vip C1ql1 cells have an average of 3898 genes detected, which is 44 more than the average for all Vip cells (3854). Vip C1ql1 cells have an average firing rate of 40.42 Hz, compared to 41.07 Hz for all Vip cells recorded. Other distinguishing features include an input resistance of 363.66 MOhms (409.69 MOhms in all Vip cells), and upstroke:downstroke ratio of 2.33 (2.32 for all Vip cells). The most distinguishing morpholgical features of Vip C1ql1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.48 vs. 0.36 average for all Vip cells), axon total length (4502.19 vs. 5125.69 microns for all Vip cells), dendrite total length (2115.16 vs. 2222.79 microns for all Vip cells), and stems (3 vs. 3.73 for all Vip cells)." @default.
- CS202002013_20 isDefinedBy cs202002013.owl @default.
- CS202002013_20 label "RNAseq 020 - CS202002013_20" @default.
- CS202002013_20 prefLabel "Vip C1ql1" @default.