Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_203> ?p ?o ?g. }
Showing items 1 to 28 of
28
with 100 items per page.
- CS202002013_203 cell_set_additional_aliases "L6b subplate" @default.
- CS202002013_203 cell_set_additional_aliases "L6b" @default.
- CS202002013_203 cell_set_alias_assignee "Federico Scala" @default.
- CS202002013_203 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_203 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_203 cell_set_alias_citation "PMID:33184512" @default.
- CS202002013_203 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_203 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_203 cell_set_aligned_alias "L6b" @default.
- CS202002013_203 cell_set_label "RNAseq 081-085" @default.
- CS202002013_203 cell_set_preferred_alias "L6b" @default.
- CS202002013_203 node_metadata "{"cell_set_preferred_alias": "L6b", "original_label": "n87", "cell_set_label": "RNAseq 081-085", "cell_set_accession": "CS202002013_203", "cell_set_aligned_alias": "L6b", "cell_set_additional_aliases": "L6b|L6b subplate", "cell_set_alias_assignee": "Zizhen Yao||Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "PMID:34616066||PMID:34616062|PMID:33184512", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85", "cell_type_card": "Subclass", "cell_set_color": "#53377D"}" @default.
- CS202002013_203 original_label "n87" @default.
- CS202002013_203 PCL_0010051 "Subclass" @default.
- CS202002013_203 PCL_0010059 "CS202002013_203" @default.
- CS202002013_203 RO_0015003 CS202002013_196 @default.
- CS202002013_203 hasExactSynonym "L6b subplate" @default.
- CS202002013_203 hasExactSynonym "L6b" @default.
- CS202002013_203 hasRelatedSynonym "L6b subplate" @default.
- CS202002013_203 hasRelatedSynonym "L6b" @default.
- CS202002013_203 type B98a9f5e849799d05a7a9b6e48415c3c2 @default.
- CS202002013_203 type Ba9bb7f67690c4387323e4abcf4fab85a @default.
- CS202002013_203 type PCL_0010001 @default.
- CS202002013_203 type NamedIndividual @default.
- CS202002013_203 comment "L6b is: Layer 6b neurons. In Mouse primary motor cortex (CCN202002013), L6b has 5 child types: L6b Col6a1, L6b Shisa6_1, L6b Shisa6_2, L6b Ror1 and L6b Kcnip1. L6b includes the Patch-seq and connectivity types L6b|L6b subplate. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Cplx3 and Ctgf (F-beta = 0.823), based on the NS Forest method of marker gene selection. L6b cells represent 2.39% of all Glutamatergic cells collected in the snRNA-seq 10X v3 B dataset. L6b cells have an average of 5482 genes detected, which is 369 more than the average for all Glutamatergic cells (5113). The average normalized cortical depth of L6b cells is 1.001, compared to an average of 0.527 for all Glutamatergic cells. L6b cells have an average firing rate of 28.79 Hz, compared to 26.59 Hz for all Glutamatergic cells recorded. Other distinguishing features include an input resistance of 299.53 MOhms (156.52 MOhms in all Glutamatergic cells), and upstroke:downstroke ratio of 4.57 (4.03 for all Glutamatergic cells). The most distinguishing morpholgical features of L6b, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.89 vs. 0.54 average for all Glutamatergic cells), dendrite total length (2881.17 vs. 4488.4 microns for all Glutamatergic cells), and stems (5.67 vs. 7.25 for all Glutamatergic cells)." @default.
- CS202002013_203 isDefinedBy cs202002013.owl @default.
- CS202002013_203 label "RNAseq 081-085 - CS202002013_203" @default.
- CS202002013_203 prefLabel "L6b" @default.