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- CS202002013_207 cell_set_additional_aliases "L5/6 NP" @default.
- CS202002013_207 cell_set_additional_aliases "Near-projecting" @default.
- CS202002013_207 cell_set_alias_assignee "Federico Scala" @default.
- CS202002013_207 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_207 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_207 cell_set_alias_citation "PMID:33184512" @default.
- CS202002013_207 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_207 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_207 cell_set_aligned_alias "L5/6 NP" @default.
- CS202002013_207 cell_set_label "RNAseq 086-088" @default.
- CS202002013_207 cell_set_preferred_alias "L5/6 NP" @default.
- CS202002013_207 node_metadata "{"cell_set_preferred_alias": "L5/6 NP", "original_label": "n91", "cell_set_label": "RNAseq 086-088", "cell_set_accession": "CS202002013_207", "cell_set_aligned_alias": "L5/6 NP", "cell_set_additional_aliases": "L5/6 NP|Near-projecting", "cell_set_alias_assignee": "Zizhen Yao||Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "PMID:34616066||PMID:34616062|PMID:33184512", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_86|CS202002013_87|CS202002013_88", "cell_type_card": "Subclass", "cell_set_color": "#3E9E64"}" @default.
- CS202002013_207 original_label "n91" @default.
- CS202002013_207 PCL_0010051 "Subclass" @default.
- CS202002013_207 PCL_0010059 "CS202002013_207" @default.
- CS202002013_207 RO_0015003 CS202002013_234 @default.
- CS202002013_207 hasExactSynonym "L5/6 NP" @default.
- CS202002013_207 hasExactSynonym "Near-projecting" @default.
- CS202002013_207 hasRelatedSynonym "L5/6 NP" @default.
- CS202002013_207 hasRelatedSynonym "Near-projecting" @default.
- CS202002013_207 type B576a2883826111cf75cae937c0c69fd0 @default.
- CS202002013_207 type Bd44b7f04826c286272bfe6e794747281 @default.
- CS202002013_207 type PCL_0010001 @default.
- CS202002013_207 type NamedIndividual @default.
- CS202002013_207 comment "L5/6 NP is: Layer 5/6 near-projecting. In Mouse primary motor cortex (CCN202002013), L5/6 NP has 3 child types: L5/6 NP_1, L5/6 NP_2 and L5/6 NP_3. L5/6 NP includes the Patch-seq and connectivity types L5/6 NP|Near-projecting. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Etv1 and Tshz2 (F-beta = 0.858), based on the NS Forest method of marker gene selection. L5/6 NP cells represent 4.13% of all Glutamatergic cells collected in the snRNA-seq 10X v3 B dataset. L5/6 NP cells have an average of 4338 genes detected, which is 775 less than the average for all Glutamatergic cells (5113). The average normalized cortical depth of L5/6 NP cells is 0.651, compared to an average of 0.527 for all Glutamatergic cells. L5/6 NP cells have an average firing rate of 50.83 Hz, compared to 26.59 Hz for all Glutamatergic cells recorded. Other distinguishing features include an input resistance of 339.81 MOhms (156.52 MOhms in all Glutamatergic cells), and upstroke:downstroke ratio of 3.42 (4.03 for all Glutamatergic cells). The most distinguishing morpholgical features of L5/6 NP, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.55 vs. 0.54 average for all Glutamatergic cells), Glutamatergic cells), dendrite total length (2768.42 vs. 4488.4 microns for all Glutamatergic cells), and stems (4.5 vs. 7.25 for all Glutamatergic cells)." @default.
- CS202002013_207 isDefinedBy cs202002013.owl @default.
- CS202002013_207 label "RNAseq 086-088 - CS202002013_207" @default.
- CS202002013_207 prefLabel "L5/6 NP" @default.