Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_23> ?p ?o ?g. }
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- CS202002013_23 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_23 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_23 cell_set_label "RNAseq 023" @default.
- CS202002013_23 cell_set_preferred_alias "Vip Chat_1" @default.
- CS202002013_23 node_metadata "{"cell_set_preferred_alias": "Vip Chat_1", "original_label": "Vip Chat_1", "cell_set_label": "RNAseq 023", "cell_set_accession": "CS202002013_23", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#FF00FF"}" @default.
- CS202002013_23 original_label "Vip Chat_1" @default.
- CS202002013_23 PCL_0010051 "Cell Type" @default.
- CS202002013_23 PCL_0010059 "CS202002013_23" @default.
- CS202002013_23 RO_0015003 CS202002013_147 @default.
- CS202002013_23 RO_0015003 CS202002013_243 @default.
- CS202002013_23 hasRelatedSynonym "L2/3 Bipolar VIP cell" @default.
- CS202002013_23 hasRelatedSynonym "Vip-like_C1" @default.
- CS202002013_23 type B07b635143f0fb248c8299e7245a4ec91 @default.
- CS202002013_23 type B4d1e16de8ffeff923f85cebddad8ca20 @default.
- CS202002013_23 type PCL_0010001 @default.
- CS202002013_23 type NamedIndividual @default.
- CS202002013_23 comment "In Mouse primary motor cortex (CCN202002013), Vip Chat_1 is a member of the Vip subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Chat and Npy2r (F-beta = 0.675), based on the NS Forest method of marker gene selection. Vip Chat_1 cells represent 19.55% of all Vip cells collected in the snRNA-seq 10X v3 B dataset. Vip Chat_1 cells have an average of 3788 genes detected, which is 66 less than the average for all Vip cells (3854). Vip Chat_1 cells have an average firing rate of 39.69 Hz, compared to 41.07 Hz for all Vip cells recorded. Other distinguishing features include an input resistance of 349.63 MOhms (409.69 MOhms in all Vip cells), and upstroke:downstroke ratio of 2.68 (2.32 for all Vip cells). The most distinguishing morpholgical features of Vip Chat_1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.51 vs. 0.36 average for all Vip cells), axon total length (4867.11 vs. 5125.69 microns for all Vip cells), dendrite total length (2512.45 vs. 2222.79 microns for all Vip cells), and stems (3.88 vs. 3.73 for all Vip cells)." @default.
- CS202002013_23 isDefinedBy cs202002013.owl @default.
- CS202002013_23 label "RNAseq 023 - CS202002013_23" @default.
- CS202002013_23 prefLabel "Vip Chat_1" @default.