Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_232> ?p ?o ?g. }
Showing items 1 to 18 of
18
with 100 items per page.
- CS202002013_232 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_232 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_232 cell_set_aligned_alias "Sst" @default.
- CS202002013_232 cell_set_label "RNAseq 029-047" @default.
- CS202002013_232 cell_set_preferred_alias "Sst-like" @default.
- CS202002013_232 node_metadata "{"cell_set_preferred_alias": "Sst-like", "original_label": "", "cell_set_label": "RNAseq 029-047", "cell_set_accession": "CS202002013_232", "cell_set_aligned_alias": "Sst", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47", "cell_type_card": "Subclass", "cell_set_color": "#FF9900"}" @default.
- CS202002013_232 PCL_0010051 "Subclass" @default.
- CS202002013_232 PCL_0010059 "CS202002013_232" @default.
- CS202002013_232 RO_0015003 CS202002013_151 @default.
- CS202002013_232 hasExactSynonym "Sst" @default.
- CS202002013_232 type Bb966b08a9e633bba7b099de543162697 @default.
- CS202002013_232 type Bf4e61ee13627383502ae9d865aaa90be @default.
- CS202002013_232 type PCL_0010001 @default.
- CS202002013_232 type NamedIndividual @default.
- CS202002013_232 comment "Sst is: MGE-derived GABAergic subclass typically expressing Sst. In Mouse primary motor cortex (CCN202002013), Sst has 19 child types: Sst Penk, Sst Myh8_1, Sst Myh8_2, Sst Myh8_3, Sst Htr1a, Sst Etv1, Sst Pvalb Etv1, Sst Crhr2_1, Sst Crhr2_2, Sst Hpse, Sst Calb2, Sst Pappa, Sst Pvalb Calb2, Sst C1ql3_1, Sst C1ql3_2, Sst Tac2, Sst Th_1, Sst Th_2 and Sst Th_3. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Reln and Sst (F-beta = 0.89), based on the NS Forest method of marker gene selection. Sst cells represent 25.07% of all GABAergic cells collected in the snRNA-seq 10X v3 B dataset. Sst cells have an average of 4821 genes detected, which is 126 more than the average for all GABAergic cells (4695). The average normalized cortical depth of Sst cells is 0.551, compared to an average of 0.478 for all GABAergic cells. Sst cells have an average firing rate of 48.24 Hz, compared to 71.48 Hz for all GABAergic cells recorded. Other distinguishing features include an input resistance of 270.6 MOhms (262.76 MOhms in all GABAergic cells), and upstroke:downstroke ratio of 1.91 (1.91 for all GABAergic cells). The most distinguishing morpholgical features of Sst, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.41 vs. 0.4 average for all GABAergic cells), axon total length (16640.19 vs. 13796.3 microns for all GABAergic cells), dendrite total length (2670.25 vs. 2227.63 microns for all GABAergic cells), and stems (6.19 vs. 7.25 for all GABAergic cells)." @default.
- CS202002013_232 isDefinedBy cs202002013.owl @default.
- CS202002013_232 label "RNAseq 029-047 - CS202002013_232" @default.
- CS202002013_232 prefLabel "Sst-like" @default.