Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_25> ?p ?o ?g. }
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- CS202002013_25 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_25 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_25 cell_set_label "RNAseq 025" @default.
- CS202002013_25 cell_set_preferred_alias "Vip Chat_2" @default.
- CS202002013_25 node_metadata "{"cell_set_preferred_alias": "Vip Chat_2", "original_label": "Vip Chat_2", "cell_set_label": "RNAseq 025", "cell_set_accession": "CS202002013_25", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#B3128A"}" @default.
- CS202002013_25 original_label "Vip Chat_2" @default.
- CS202002013_25 PCL_0010051 "Cell Type" @default.
- CS202002013_25 PCL_0010059 "CS202002013_25" @default.
- CS202002013_25 RO_0015003 CS202002013_148 @default.
- CS202002013_25 hasRelatedSynonym "L2/3 Bipolar VIP cell" @default.
- CS202002013_25 hasRelatedSynonym "Vip-like_C1" @default.
- CS202002013_25 type B3da85970069b98237982fa9d84d47832 @default.
- CS202002013_25 type Bb2b881af476989d5a70cdac5d82f8add @default.
- CS202002013_25 type PCL_0010001 @default.
- CS202002013_25 type NamedIndividual @default.
- CS202002013_25 comment "In Mouse primary motor cortex (CCN202002013), Vip Chat_2 is a member of the Vip subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Grik4 and Htr4 (F-beta = 0.42), based on the NS Forest method of marker gene selection. Vip Chat_2 cells represent 6.19% of all Vip cells collected in the snRNA-seq 10X v3 B dataset. Vip Chat_2 cells have an average of 3583 genes detected, which is 271 less than the average for all Vip cells (3854). Vip Chat_2 cells have an average firing rate of 39.44 Hz, compared to 41.07 Hz for all Vip cells recorded. Other distinguishing features include an input resistance of 426.88 MOhms (409.69 MOhms in all Vip cells), and upstroke:downstroke ratio of 2.5 (2.32 for all Vip cells). The most distinguishing morpholgical features of Vip Chat_2, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.09 vs. 0.36 average for all Vip cells), axon total length (3299.12 vs. 5125.69 microns for all Vip cells), dendrite total length (1565.77 vs. 2222.79 microns for all Vip cells), and stems (3 vs. 3.73 for all Vip cells)." @default.
- CS202002013_25 isDefinedBy cs202002013.owl @default.
- CS202002013_25 label "RNAseq 025 - CS202002013_25" @default.
- CS202002013_25 prefLabel "Vip Chat_2" @default.