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- CS202002013_28 cell_set_additional_aliases "Long-projecting SST cell" @default.
- CS202002013_28 cell_set_additional_aliases "Sst Chodl" @default.
- CS202002013_28 cell_set_alias_assignee "Federico Scala" @default.
- CS202002013_28 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_28 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_28 cell_set_alias_citation "PMID:33184512" @default.
- CS202002013_28 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_28 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_28 cell_set_aligned_alias "Sst Chodl" @default.
- CS202002013_28 cell_set_label "RNAseq 028" @default.
- CS202002013_28 cell_set_preferred_alias "Sst Chodl" @default.
- CS202002013_28 node_metadata "{"cell_set_preferred_alias": "Sst Chodl", "original_label": "Sst Chodl", "cell_set_label": "RNAseq 028", "cell_set_accession": "CS202002013_28", "cell_set_aligned_alias": "Sst Chodl", "cell_set_additional_aliases": "Sst Chodl|Long-projecting SST cell", "cell_set_alias_assignee": "Zizhen Yao||Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "PMID:34616066||PMID:34616062|PMID:33184512", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type,Subclass", "cell_set_color": "#FFFF00"}" @default.
- CS202002013_28 original_label "Sst Chodl" @default.
- CS202002013_28 PCL_0010051 "Cell Type" @default.
- CS202002013_28 PCL_0010051 "Subclass" @default.
- CS202002013_28 PCL_0010059 "CS202002013_28" @default.
- CS202002013_28 RO_0015003 CS202002013_150 @default.
- CS202002013_28 hasExactSynonym "Long-projecting SST cell" @default.
- CS202002013_28 hasExactSynonym "Sst Chodl" @default.
- CS202002013_28 hasRelatedSynonym "Long-projecting SST cell" @default.
- CS202002013_28 hasRelatedSynonym "Sst Chodl" @default.
- CS202002013_28 type B097ae9cc4d39dcccc6a4ee8c5c8e726c @default.
- CS202002013_28 type B75042b1300d579c0acff45b2287302ce @default.
- CS202002013_28 type PCL_0010001 @default.
- CS202002013_28 type NamedIndividual @default.
- CS202002013_28 comment "Sst Chodl is: Distinct Sst type expressing Chodl in mouse; the only reported long-range projecting GABAergic type. In Mouse primary motor cortex (CCN202002013), Sst Chodl has 1 child types: and Sst Chodl. Sst Chodl includes the Patch-seq and connectivity types Sst Chodl|Long-projecting SST cell. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Nos1 and Chodl (F-beta = 0.967), based on the NS Forest method of marker gene selection. Sst Chodl cells represent 1.23% of all GABAergic cells collected in the snRNA-seq 10X v3 B dataset. Sst Chodl cells have an average of 4904 genes detected, which is 209 more than the average for all GABAergic cells (4695). The average normalized cortical depth of Sst Chodl cells is 0.745, compared to an average of 0.478 for all GABAergic cells. Sst Chodl cells have an average firing rate of 28.21 Hz, compared to 71.48 Hz for all GABAergic cells recorded. Other distinguishing features include an input resistance of 361.55 MOhms (262.76 MOhms in all GABAergic cells), and upstroke:downstroke ratio of 2.52 (1.91 for all GABAergic cells)." @default.
- CS202002013_28 isDefinedBy cs202002013.owl @default.
- CS202002013_28 label "RNAseq 028 - CS202002013_28" @default.
- CS202002013_28 prefLabel "Sst Chodl" @default.