Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_29> ?p ?o ?g. }
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- CS202002013_29 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_29 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_29 cell_set_label "RNAseq 029" @default.
- CS202002013_29 cell_set_preferred_alias "Sst Penk" @default.
- CS202002013_29 node_metadata "{"cell_set_preferred_alias": "Sst Penk", "original_label": "Sst Penk", "cell_set_label": "RNAseq 029", "cell_set_accession": "CS202002013_29", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#FF8011"}" @default.
- CS202002013_29 original_label "Sst Penk" @default.
- CS202002013_29 PCL_0010051 "Cell Type" @default.
- CS202002013_29 PCL_0010059 "CS202002013_29" @default.
- CS202002013_29 RO_0015003 CS202002013_155 @default.
- CS202002013_29 hasRelatedSynonym "Sst-like_C2" @default.
- CS202002013_29 type B94d4e612a77b8cdd3faad61a8cc3fc6b @default.
- CS202002013_29 type Ba558d3a0b7a2681ff6f28373f1e08900 @default.
- CS202002013_29 type PCL_0010001 @default.
- CS202002013_29 type NamedIndividual @default.
- CS202002013_29 comment "In Mouse primary motor cortex (CCN202002013), Sst Penk is a member of the Sst subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is 9530026P05Rik and Cartpt and Il1rapl2 (F-beta = 0.654), based on the NS Forest method of marker gene selection. Sst Penk cells represent 2.77% of all Sst cells collected in the snRNA-seq 10X v3 B dataset. Sst Penk cells have an average of 4513 genes detected, which is 308 more than the average for all Sst cells (4821). Sst Penk cells have an average firing rate of 38.89 Hz, compared to 48.24 Hz for all Sst cells recorded. Other distinguishing features include an input resistance of 249.89 MOhms (270.6 MOhms in all Sst cells), and upstroke:downstroke ratio of 1.8 (1.91 for all Sst cells). The most distinguishing morpholgical features of Sst Penk, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.88 vs. 0.41 average for all Sst cells), axon total length (16112.63 vs. 16640.19 microns for all Sst cells), dendrite total length (3345.26 vs. 2670.25 microns for all Sst cells), and stems (9 vs. 6.19 for all Sst cells)." @default.
- CS202002013_29 isDefinedBy cs202002013.owl @default.
- CS202002013_29 label "RNAseq 029 - CS202002013_29" @default.
- CS202002013_29 prefLabel "Sst Penk" @default.