Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_3> ?p ?o ?g. }
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- CS202002013_3 cell_set_additional_aliases "Canopy cell" @default.
- CS202002013_3 cell_set_alias_assignee "Federico Scala" @default.
- CS202002013_3 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_3 cell_set_alias_citation "PMID:33184512" @default.
- CS202002013_3 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_3 cell_set_label "RNAseq 003" @default.
- CS202002013_3 cell_set_preferred_alias "Lamp5 Egln3_2" @default.
- CS202002013_3 node_metadata "{"cell_set_preferred_alias": "Lamp5 Egln3_2", "original_label": "Lamp5 Egln3_2", "cell_set_label": "RNAseq 003", "cell_set_accession": "CS202002013_3", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "Canopy cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala|Zizhen Yao", "cell_set_alias_citation": "PMID:34616066|PMID:33184512|PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#DD8091"}" @default.
- CS202002013_3 original_label "Lamp5 Egln3_2" @default.
- CS202002013_3 PCL_0010051 "Cell Type" @default.
- CS202002013_3 PCL_0010059 "CS202002013_3" @default.
- CS202002013_3 RO_0015003 CS202002013_128 @default.
- CS202002013_3 hasExactSynonym "Canopy cell" @default.
- CS202002013_3 hasRelatedSynonym "Canopy cell" @default.
- CS202002013_3 hasRelatedSynonym "Lamp5-like_C5" @default.
- CS202002013_3 type Ba76417562533830b5a5687930ae22792 @default.
- CS202002013_3 type Bccc5dd10f872e89c9c1b224f64380f3a @default.
- CS202002013_3 type PCL_0010001 @default.
- CS202002013_3 type NamedIndividual @default.
- CS202002013_3 comment "In Mouse primary motor cortex (CCN202002013), Lamp5 Egln3_2 is a member of the Lamp5 subclass. Lamp5 Egln3_2 includes the Patch-seq and connectivity types Canopy cell. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Crim1 and Zfp804b (F-beta = 0.607), based on the NS Forest method of marker gene selection. Lamp5 Egln3_2 cells represent 5.65% of all Lamp5 cells collected in the snRNA-seq 10X v3 B dataset. Lamp5 Egln3_2 cells have an average of 4398 genes detected, which is 230 less than the average for all Lamp5 cells (4628). Lamp5 Egln3_2 cells have an average firing rate of 31.5 Hz, compared to 40.62 Hz for all Lamp5 cells recorded. Other distinguishing features include an input resistance of 246.62 MOhms (240.82 MOhms in all Lamp5 cells), and upstroke:downstroke ratio of 2.38 (3.13 for all Lamp5 cells). The most distinguishing morpholgical features of Lamp5 Egln3_2, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.05 vs. 0.2 average for all Lamp5 cells), axon total length (9074.27 vs. 10733.35 microns for all Lamp5 cells), dendrite total length (2265.68 vs. 2247.19 microns for all Lamp5 cells), and stems (5.75 vs. 7.47 for all Lamp5 cells)." @default.
- CS202002013_3 isDefinedBy cs202002013.owl @default.
- CS202002013_3 label "RNAseq 003 - CS202002013_3" @default.
- CS202002013_3 prefLabel "Lamp5 Egln3_2" @default.