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- CS202002013_33 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_33 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_33 cell_set_label "RNAseq 033" @default.
- CS202002013_33 cell_set_preferred_alias "Sst Htr1a" @default.
- CS202002013_33 node_metadata "{"cell_set_preferred_alias": "Sst Htr1a", "original_label": "Sst Htr1a", "cell_set_label": "RNAseq 033", "cell_set_accession": "CS202002013_33", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#BFAF00"}" @default.
- CS202002013_33 original_label "Sst Htr1a" @default.
- CS202002013_33 PCL_0010051 "Cell Type" @default.
- CS202002013_33 PCL_0010059 "CS202002013_33" @default.
- CS202002013_33 RO_0015003 CS202002013_156 @default.
- CS202002013_33 hasRelatedSynonym "Sst-like_C1" @default.
- CS202002013_33 type B4a88b7265f295b23b764c573a2f06289 @default.
- CS202002013_33 type B5f90a3e5807acb5971d8efe978d94af1 @default.
- CS202002013_33 type PCL_0010001 @default.
- CS202002013_33 type NamedIndividual @default.
- CS202002013_33 comment "In Mouse primary motor cortex (CCN202002013), Sst Htr1a is a member of the Sst subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Gm30835 and Pdyn (F-beta = 0.64), based on the NS Forest method of marker gene selection. Sst Htr1a cells represent 3.89% of all Sst cells collected in the snRNA-seq 10X v3 B dataset. Sst Htr1a cells have an average of 4720 genes detected, which is 101 less than the average for all Sst cells (4821). Sst Htr1a cells have an average firing rate of 37.78 Hz, compared to 48.24 Hz for all Sst cells recorded. Other distinguishing features include an input resistance of 287.49 MOhms (270.6 MOhms in all Sst cells), and upstroke:downstroke ratio of 2.16 (1.91 for all Sst cells). The most distinguishing morpholgical features of Sst Htr1a, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.4 vs. 0.41 average for all Sst cells), axon total length (16579.17 vs. 16640.19 microns for all Sst cells), dendrite total length (2143.25 vs. 2670.25 microns for all Sst cells), and stems (4.25 vs. 6.19 for all Sst cells)." @default.
- CS202002013_33 isDefinedBy cs202002013.owl @default.
- CS202002013_33 label "RNAseq 033 - CS202002013_33" @default.
- CS202002013_33 prefLabel "Sst Htr1a" @default.