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- CS202002013_35 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_35 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_35 cell_set_label "RNAseq 035" @default.
- CS202002013_35 cell_set_preferred_alias "Sst Pvalb Etv1" @default.
- CS202002013_35 node_metadata "{"cell_set_preferred_alias": "Sst Pvalb Etv1", "original_label": "Sst Pvalb Etv1", "cell_set_label": "RNAseq 035", "cell_set_accession": "CS202002013_35", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#D9C566"}" @default.
- CS202002013_35 original_label "Sst Pvalb Etv1" @default.
- CS202002013_35 PCL_0010051 "Cell Type" @default.
- CS202002013_35 PCL_0010059 "CS202002013_35" @default.
- CS202002013_35 RO_0015003 CS202002013_159 @default.
- CS202002013_35 RO_0015003 CS202002013_245 @default.
- CS202002013_35 hasRelatedSynonym "L5 T Martinotti cell" @default.
- CS202002013_35 hasRelatedSynonym "Sst-like_C3" @default.
- CS202002013_35 type B4afc9ab9968252def6ad9967816da81c @default.
- CS202002013_35 type Bee5310194d2e2ab5fc7139c1340ee399 @default.
- CS202002013_35 type PCL_0010001 @default.
- CS202002013_35 type NamedIndividual @default.
- CS202002013_35 comment "In Mouse primary motor cortex (CCN202002013), Sst Pvalb Etv1 is a member of the Sst subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Edaradd and Spon1 and Whrn (F-beta = 0.63), based on the NS Forest method of marker gene selection. Sst Pvalb Etv1 cells represent 1.91% of all Sst cells collected in the snRNA-seq 10X v3 B dataset. Sst Pvalb Etv1 cells have an average of 5270 genes detected, which is 449 more than the average for all Sst cells (4821). Sst Pvalb Etv1 cells have an average firing rate of 43.12 Hz, compared to 48.24 Hz for all Sst cells recorded. Other distinguishing features include an input resistance of 254.53 MOhms (270.6 MOhms in all Sst cells), and upstroke:downstroke ratio of 1.87 (1.91 for all Sst cells). The most distinguishing morpholgical features of Sst Pvalb Etv1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.53 vs. 0.41 average for all Sst cells), axon total length (15500.66 vs. 16640.19 microns for all Sst cells), dendrite total length (2886.12 vs. 2670.25 microns for all Sst cells), and stems (9 vs. 6.19 for all Sst cells)." @default.
- CS202002013_35 isDefinedBy cs202002013.owl @default.
- CS202002013_35 label "RNAseq 035 - CS202002013_35" @default.
- CS202002013_35 prefLabel "Sst Pvalb Etv1" @default.