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- CS202002013_37 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_37 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_37 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_37 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_37 cell_set_aligned_alias "Sst_4" @default.
- CS202002013_37 cell_set_label "RNAseq 037" @default.
- CS202002013_37 cell_set_preferred_alias "Sst Crhr2_2" @default.
- CS202002013_37 node_metadata "{"cell_set_preferred_alias": "Sst Crhr2_2", "original_label": "Sst Crhr2_2", "cell_set_label": "RNAseq 037", "cell_set_accession": "CS202002013_37", "cell_set_aligned_alias": "Sst_4", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "PMID:34616066|PMID:34616062", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#B0993C"}" @default.
- CS202002013_37 original_label "Sst Crhr2_2" @default.
- CS202002013_37 PCL_0010051 "Cell Type" @default.
- CS202002013_37 PCL_0010059 "CS202002013_37" @default.
- CS202002013_37 RO_0015003 CS202002013_158 @default.
- CS202002013_37 RO_0015003 CS202002013_161 @default.
- CS202002013_37 hasExactSynonym "Sst_4" @default.
- CS202002013_37 hasRelatedSynonym "L5 non-Martinotti cell" @default.
- CS202002013_37 hasRelatedSynonym "Sst_4" @default.
- CS202002013_37 type B949c58d1fb671b6a5cee0ed5e852d059 @default.
- CS202002013_37 type Bbb2ae836b81e3ee4523853a65e340ad7 @default.
- CS202002013_37 type PCL_0010001 @default.
- CS202002013_37 type NamedIndividual @default.
- CS202002013_37 comment "In Mouse primary motor cortex (CCN202002013), Sst Crhr2_2 is a member of the Sst subclass. Sst Crhr2_2 includes the Patch-seq and connectivity types Sst_4. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Lypd6b and Trpc6 (F-beta = 0.48), based on the NS Forest method of marker gene selection. Sst Crhr2_2 cells represent 6.31% of all Sst cells collected in the snRNA-seq 10X v3 B dataset. Sst Crhr2_2 cells have an average of 5313 genes detected, which is 492 more than the average for all Sst cells (4821). Sst Crhr2_2 cells have an average firing rate of 35.76 Hz, compared to 48.24 Hz for all Sst cells recorded. Other distinguishing features include an input resistance of 282.4 MOhms (270.6 MOhms in all Sst cells), and upstroke:downstroke ratio of 2.26 (1.91 for all Sst cells). The most distinguishing morpholgical features of Sst Crhr2_2, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.63 vs. 0.41 average for all Sst cells), axon total length (10679.24 vs. 16640.19 microns for all Sst cells), dendrite total length (3486.19 vs. 2670.25 microns for all Sst cells), and stems (6.33 vs. 6.19 for all Sst cells)." @default.
- CS202002013_37 isDefinedBy cs202002013.owl @default.
- CS202002013_37 label "RNAseq 037 - CS202002013_37" @default.
- CS202002013_37 prefLabel "Sst Crhr2_2" @default.