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- CS202002013_38 cell_set_additional_aliases "L4 SST cell" @default.
- CS202002013_38 cell_set_alias_assignee "Federico Scala" @default.
- CS202002013_38 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_38 cell_set_alias_citation "PMID:33184512" @default.
- CS202002013_38 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_38 cell_set_label "RNAseq 038" @default.
- CS202002013_38 cell_set_preferred_alias "Sst Hpse" @default.
- CS202002013_38 node_metadata "{"cell_set_preferred_alias": "Sst Hpse", "original_label": "Sst Hpse", "cell_set_label": "RNAseq 038", "cell_set_accession": "CS202002013_38", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "L4 SST cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "PMID:34616066|PMID:33184512", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#CDB115"}" @default.
- CS202002013_38 original_label "Sst Hpse" @default.
- CS202002013_38 PCL_0010051 "Cell Type" @default.
- CS202002013_38 PCL_0010059 "CS202002013_38" @default.
- CS202002013_38 RO_0015003 CS202002013_163 @default.
- CS202002013_38 hasExactSynonym "L4 SST cell" @default.
- CS202002013_38 hasRelatedSynonym "L4 SST cell" @default.
- CS202002013_38 hasRelatedSynonym "Sst-like_C3" @default.
- CS202002013_38 type B144f1c11e0fdac5c9bef7c9b434426a1 @default.
- CS202002013_38 type B4b78657bcd624ea0425dceaffe38645e @default.
- CS202002013_38 type PCL_0010001 @default.
- CS202002013_38 type NamedIndividual @default.
- CS202002013_38 comment "In Mouse primary motor cortex (CCN202002013), Sst Hpse is a member of the Sst subclass. Sst Hpse includes the Patch-seq and connectivity types L4 SST cell. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Hpse and Rerg (F-beta = 0.71), based on the NS Forest method of marker gene selection. Sst Hpse cells represent 9.37% of all Sst cells collected in the snRNA-seq 10X v3 B dataset. Sst Hpse cells have an average of 4784 genes detected, which is 37 less than the average for all Sst cells (4821). Sst Hpse cells have an average firing rate of 49.76 Hz, compared to 48.24 Hz for all Sst cells recorded. Other distinguishing features include an input resistance of 239.76 MOhms (270.6 MOhms in all Sst cells), and upstroke:downstroke ratio of 1.95 (1.91 for all Sst cells). The most distinguishing morpholgical features of Sst Hpse, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.31 vs. 0.41 average for all Sst cells), axon total length (21022.61 vs. 16640.19 microns for all Sst cells), dendrite total length (2436.43 vs. 2670.25 microns for all Sst cells), and stems (5.29 vs. 6.19 for all Sst cells)." @default.
- CS202002013_38 isDefinedBy cs202002013.owl @default.
- CS202002013_38 label "RNAseq 038 - CS202002013_38" @default.
- CS202002013_38 prefLabel "Sst Hpse" @default.