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- CS202002013_39 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_39 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_39 cell_set_label "RNAseq 039" @default.
- CS202002013_39 cell_set_preferred_alias "Sst Calb2" @default.
- CS202002013_39 node_metadata "{"cell_set_preferred_alias": "Sst Calb2", "original_label": "Sst Calb2", "cell_set_label": "RNAseq 039", "cell_set_accession": "CS202002013_39", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#D2A328"}" @default.
- CS202002013_39 original_label "Sst Calb2" @default.
- CS202002013_39 PCL_0010051 "Cell Type" @default.
- CS202002013_39 PCL_0010059 "CS202002013_39" @default.
- CS202002013_39 RO_0015003 CS202002013_164 @default.
- CS202002013_39 hasRelatedSynonym "L2/3/5 fan Martinotti cell" @default.
- CS202002013_39 hasRelatedSynonym "Sst-like_C3" @default.
- CS202002013_39 type Ba876f12b416be4695e24c56435ec505d @default.
- CS202002013_39 type Bf0070b459c2ebf0b38b08e83e3beb005 @default.
- CS202002013_39 type PCL_0010001 @default.
- CS202002013_39 type NamedIndividual @default.
- CS202002013_39 comment "In Mouse primary motor cortex (CCN202002013), Sst Calb2 is a member of the Sst subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Olfm3 and Sst (F-beta = 0.782), based on the NS Forest method of marker gene selection. Sst Calb2 cells represent 13.2% of all Sst cells collected in the snRNA-seq 10X v3 B dataset. Sst Calb2 cells have an average of 4810 genes detected, which is 11 less than the average for all Sst cells (4821). Sst Calb2 cells have an average firing rate of 39.64 Hz, compared to 48.24 Hz for all Sst cells recorded. Other distinguishing features include an input resistance of 277.8 MOhms (270.6 MOhms in all Sst cells), and upstroke:downstroke ratio of 1.97 (1.91 for all Sst cells). The most distinguishing morpholgical features of Sst Calb2, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.22 vs. 0.41 average for all Sst cells), axon total length (17239.42 vs. 16640.19 microns for all Sst cells), dendrite total length (2296.36 vs. 2670.25 microns for all Sst cells), and stems (6.1 vs. 6.19 for all Sst cells)." @default.
- CS202002013_39 isDefinedBy cs202002013.owl @default.
- CS202002013_39 label "RNAseq 039 - CS202002013_39" @default.
- CS202002013_39 prefLabel "Sst Calb2" @default.