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- CS202002013_41 cell_set_additional_aliases "L2/3 PV-like cell" @default.
- CS202002013_41 cell_set_alias_assignee "Federico Scala" @default.
- CS202002013_41 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_41 cell_set_alias_citation "PMID:33184512" @default.
- CS202002013_41 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_41 cell_set_label "RNAseq 041" @default.
- CS202002013_41 cell_set_preferred_alias "Sst Pvalb Calb2" @default.
- CS202002013_41 node_metadata "{"cell_set_preferred_alias": "Sst Pvalb Calb2", "original_label": "Sst Pvalb Calb2", "cell_set_label": "RNAseq 041", "cell_set_accession": "CS202002013_41", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "L2/3 PV-like cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "PMID:34616066|PMID:33184512", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#784F14"}" @default.
- CS202002013_41 original_label "Sst Pvalb Calb2" @default.
- CS202002013_41 PCL_0010051 "Cell Type" @default.
- CS202002013_41 PCL_0010059 "CS202002013_41" @default.
- CS202002013_41 RO_0015003 CS202002013_162 @default.
- CS202002013_41 hasExactSynonym "L2/3 PV-like cell" @default.
- CS202002013_41 hasRelatedSynonym "L2/3 PV-like cell" @default.
- CS202002013_41 hasRelatedSynonym "Sst-like_C3" @default.
- CS202002013_41 type B03083ba1a4343b110495a1f5a1161b62 @default.
- CS202002013_41 type Be4a5cf0678518a65cba413af7cd7984f @default.
- CS202002013_41 type PCL_0010001 @default.
- CS202002013_41 type NamedIndividual @default.
- CS202002013_41 comment "In Mouse primary motor cortex (CCN202002013), Sst Pvalb Calb2 is a member of the Sst subclass. Sst Pvalb Calb2 includes the Patch-seq and connectivity types L2/3 PV-like cell. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Moxd1 and Prkg2 (F-beta = 0.613), based on the NS Forest method of marker gene selection. Sst Pvalb Calb2 cells represent 12.14% of all Sst cells collected in the snRNA-seq 10X v3 B dataset. Sst Pvalb Calb2 cells have an average of 4891 genes detected, which is 70 more than the average for all Sst cells (4821). Sst Pvalb Calb2 cells have an average firing rate of 61.54 Hz, compared to 48.24 Hz for all Sst cells recorded. Other distinguishing features include an input resistance of 221.79 MOhms (270.6 MOhms in all Sst cells), and upstroke:downstroke ratio of 1.49 (1.91 for all Sst cells). The most distinguishing morpholgical features of Sst Pvalb Calb2, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.27 vs. 0.41 average for all Sst cells), axon total length (16342.88 vs. 16640.19 microns for all Sst cells), dendrite total length (2615.53 vs. 2670.25 microns for all Sst cells), and stems (6.67 vs. 6.19 for all Sst cells)." @default.
- CS202002013_41 isDefinedBy cs202002013.owl @default.
- CS202002013_41 label "RNAseq 041 - CS202002013_41" @default.
- CS202002013_41 prefLabel "Sst Pvalb Calb2" @default.