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- CS202002013_42 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_42 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_42 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_42 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_42 cell_set_aligned_alias "Sst_5" @default.
- CS202002013_42 cell_set_label "RNAseq 042" @default.
- CS202002013_42 cell_set_preferred_alias "Sst C1ql3_1" @default.
- CS202002013_42 node_metadata "{"cell_set_preferred_alias": "Sst C1ql3_1", "original_label": "Sst C1ql3_1", "cell_set_label": "RNAseq 042", "cell_set_accession": "CS202002013_42", "cell_set_aligned_alias": "Sst_5", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "PMID:34616066|PMID:34616062", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#802600"}" @default.
- CS202002013_42 original_label "Sst C1ql3_1" @default.
- CS202002013_42 PCL_0010051 "Cell Type" @default.
- CS202002013_42 PCL_0010059 "CS202002013_42" @default.
- CS202002013_42 RO_0015003 CS202002013_166 @default.
- CS202002013_42 hasExactSynonym "Sst_5" @default.
- CS202002013_42 hasRelatedSynonym "L5/6 non-Martinotti cell" @default.
- CS202002013_42 hasRelatedSynonym "Sst_5" @default.
- CS202002013_42 type B54625e72bc662a9b39c1bd287c5f37ab @default.
- CS202002013_42 type B6889f0cecce25a60a421a7291c58e6fb @default.
- CS202002013_42 type PCL_0010001 @default.
- CS202002013_42 type NamedIndividual @default.
- CS202002013_42 comment "In Mouse primary motor cortex (CCN202002013), Sst C1ql3_1 is a member of the Sst subclass. Sst C1ql3_1 includes the Patch-seq and connectivity types Sst_5. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Gm48893 and Pard3b (F-beta = 0.501), based on the NS Forest method of marker gene selection. Sst C1ql3_1 cells represent 4% of all Sst cells collected in the snRNA-seq 10X v3 B dataset. Sst C1ql3_1 cells have an average of 4832 genes detected, which is 11 more than the average for all Sst cells (4821). Sst C1ql3_1 cells have an average firing rate of 64.17 Hz, compared to 48.24 Hz for all Sst cells recorded. Other distinguishing features include an input resistance of 298.32 MOhms (270.6 MOhms in all Sst cells), and upstroke:downstroke ratio of 1.66 (1.91 for all Sst cells). The most distinguishing morpholgical features of Sst C1ql3_1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.54 vs. 0.41 average for all Sst cells), axon total length (15108.86 vs. 16640.19 microns for all Sst cells), dendrite total length (3976.56 vs. 2670.25 microns for all Sst cells), and stems (9 vs. 6.19 for all Sst cells)." @default.
- CS202002013_42 isDefinedBy cs202002013.owl @default.
- CS202002013_42 label "RNAseq 042 - CS202002013_42" @default.
- CS202002013_42 prefLabel "Sst C1ql3_1" @default.