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- CS202002013_43 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_43 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_43 cell_set_label "RNAseq 043" @default.
- CS202002013_43 cell_set_preferred_alias "Sst C1ql3_2" @default.
- CS202002013_43 node_metadata "{"cell_set_preferred_alias": "Sst C1ql3_2", "original_label": "Sst C1ql3_2", "cell_set_label": "RNAseq 043", "cell_set_accession": "CS202002013_43", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#8A2B1A"}" @default.
- CS202002013_43 original_label "Sst C1ql3_2" @default.
- CS202002013_43 PCL_0010051 "Cell Type" @default.
- CS202002013_43 PCL_0010059 "CS202002013_43" @default.
- CS202002013_43 RO_0015003 CS202002013_166 @default.
- CS202002013_43 RO_0015003 CS202002013_246 @default.
- CS202002013_43 hasRelatedSynonym "L5/6 non-Martinotti cell" @default.
- CS202002013_43 hasRelatedSynonym "Sst-like_C6" @default.
- CS202002013_43 type Be5358582820b0aaa57c2658b21f81208 @default.
- CS202002013_43 type Be913d47370f85e4daf9129300a9243c5 @default.
- CS202002013_43 type PCL_0010001 @default.
- CS202002013_43 type NamedIndividual @default.
- CS202002013_43 comment "In Mouse primary motor cortex (CCN202002013), Sst C1ql3_2 is a member of the Sst subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Brinp3 and Gxylt2 and Ndnf (F-beta = 0.684), based on the NS Forest method of marker gene selection. Sst C1ql3_2 cells represent 3.61% of all Sst cells collected in the snRNA-seq 10X v3 B dataset. Sst C1ql3_2 cells have an average of 5028 genes detected, which is 207 more than the average for all Sst cells (4821). Sst C1ql3_2 cells have an average firing rate of 71 Hz, compared to 48.24 Hz for all Sst cells recorded. Other distinguishing features include an input resistance of 208.54 MOhms (270.6 MOhms in all Sst cells), and upstroke:downstroke ratio of 1.61 (1.91 for all Sst cells). The most distinguishing morpholgical features of Sst C1ql3_2, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.7 vs. 0.41 average for all Sst cells), axon total length (16146.39 vs. 16640.19 microns for all Sst cells), dendrite total length (2476.95 vs. 2670.25 microns for all Sst cells), and stems (6 vs. 6.19 for all Sst cells)." @default.
- CS202002013_43 isDefinedBy cs202002013.owl @default.
- CS202002013_43 label "RNAseq 043 - CS202002013_43" @default.
- CS202002013_43 prefLabel "Sst C1ql3_2" @default.