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- CS202002013_44 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_44 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_44 cell_set_label "RNAseq 044" @default.
- CS202002013_44 cell_set_preferred_alias "Sst Tac2" @default.
- CS202002013_44 node_metadata "{"cell_set_preferred_alias": "Sst Tac2", "original_label": "Sst Tac2", "cell_set_label": "RNAseq 044", "cell_set_accession": "CS202002013_44", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#804600"}" @default.
- CS202002013_44 original_label "Sst Tac2" @default.
- CS202002013_44 PCL_0010051 "Cell Type" @default.
- CS202002013_44 PCL_0010059 "CS202002013_44" @default.
- CS202002013_44 RO_0015003 CS202002013_167 @default.
- CS202002013_44 hasRelatedSynonym "L5/6 non-Martinotti cell" @default.
- CS202002013_44 hasRelatedSynonym "Sst-like_C6" @default.
- CS202002013_44 type B8f38bb8013a0a5c46660a1dd788b6d52 @default.
- CS202002013_44 type Bcb9975b56fa920f2f19bc7e90291704b @default.
- CS202002013_44 type PCL_0010001 @default.
- CS202002013_44 type NamedIndividual @default.
- CS202002013_44 comment "In Mouse primary motor cortex (CCN202002013), Sst Tac2 is a member of the Sst subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Cdh13 and Tac2 and Tmtc2 (F-beta = 0.66), based on the NS Forest method of marker gene selection. Sst Tac2 cells represent 2.44% of all Sst cells collected in the snRNA-seq 10X v3 B dataset. Sst Tac2 cells have an average of 5102 genes detected, which is 281 more than the average for all Sst cells (4821). Sst Tac2 cells have an average firing rate of 42.08 Hz, compared to 48.24 Hz for all Sst cells recorded. Other distinguishing features include an input resistance of 301.05 MOhms (270.6 MOhms in all Sst cells), and upstroke:downstroke ratio of 2.28 (1.91 for all Sst cells). The most distinguishing morpholgical features of Sst Tac2, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.62 vs. 0.41 average for all Sst cells), axon total length (6883.25 vs. 16640.19 microns for all Sst cells), dendrite total length (4311.18 vs. 2670.25 microns for all Sst cells), and stems (6.5 vs. 6.19 for all Sst cells)." @default.
- CS202002013_44 isDefinedBy cs202002013.owl @default.
- CS202002013_44 label "RNAseq 044 - CS202002013_44" @default.
- CS202002013_44 prefLabel "Sst Tac2" @default.