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- CS202002013_45 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_45 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_45 cell_set_label "RNAseq 045" @default.
- CS202002013_45 cell_set_preferred_alias "Sst Th_1" @default.
- CS202002013_45 node_metadata "{"cell_set_preferred_alias": "Sst Th_1", "original_label": "Sst Th_1", "cell_set_label": "RNAseq 045", "cell_set_accession": "CS202002013_45", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#8C6012"}" @default.
- CS202002013_45 original_label "Sst Th_1" @default.
- CS202002013_45 PCL_0010051 "Cell Type" @default.
- CS202002013_45 PCL_0010059 "CS202002013_45" @default.
- CS202002013_45 RO_0015003 CS202002013_167 @default.
- CS202002013_45 hasRelatedSynonym "L5/6 non-Martinotti cell" @default.
- CS202002013_45 hasRelatedSynonym "Sst-like_C6" @default.
- CS202002013_45 type B1e8a61b960a0a32bd7581a13907ecf52 @default.
- CS202002013_45 type Bc77fe8175cceed6fe61322e5a25e6847 @default.
- CS202002013_45 type PCL_0010001 @default.
- CS202002013_45 type NamedIndividual @default.
- CS202002013_45 comment "In Mouse primary motor cortex (CCN202002013), Sst Th_1 is a member of the Sst subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is St6galnac5 and St8sia4 and Zfpm2 (F-beta = 0.513), based on the NS Forest method of marker gene selection. Sst Th_1 cells represent 2.57% of all Sst cells collected in the snRNA-seq 10X v3 B dataset. Sst Th_1 cells have an average of 5297 genes detected, which is 476 more than the average for all Sst cells (4821). Sst Th_1 cells have an average firing rate of 52.96 Hz, compared to 48.24 Hz for all Sst cells recorded. Other distinguishing features include an input resistance of 310.73 MOhms (270.6 MOhms in all Sst cells), and upstroke:downstroke ratio of 1.94 (1.91 for all Sst cells). The most distinguishing morpholgical features of Sst Th_1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.83 vs. 0.41 average for all Sst cells), axon total length (10037.92 vs. 16640.19 microns for all Sst cells), dendrite total length (2676.04 vs. 2670.25 microns for all Sst cells), and stems (6 vs. 6.19 for all Sst cells)." @default.
- CS202002013_45 isDefinedBy cs202002013.owl @default.
- CS202002013_45 label "RNAseq 045 - CS202002013_45" @default.
- CS202002013_45 prefLabel "Sst Th_1" @default.