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- CS202002013_47 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_47 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_47 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_47 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_47 cell_set_aligned_alias "Sst_7" @default.
- CS202002013_47 cell_set_label "RNAseq 047" @default.
- CS202002013_47 cell_set_preferred_alias "Sst Th_3" @default.
- CS202002013_47 node_metadata "{"cell_set_preferred_alias": "Sst Th_3", "original_label": "Sst Th_3", "cell_set_label": "RNAseq 047", "cell_set_accession": "CS202002013_47", "cell_set_aligned_alias": "Sst_7", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "PMID:34616066|PMID:34616062", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#9B211B"}" @default.
- CS202002013_47 original_label "Sst Th_3" @default.
- CS202002013_47 PCL_0010051 "Cell Type" @default.
- CS202002013_47 PCL_0010059 "CS202002013_47" @default.
- CS202002013_47 RO_0015003 CS202002013_170 @default.
- CS202002013_47 hasExactSynonym "Sst_7" @default.
- CS202002013_47 hasRelatedSynonym "L6 Th+ SST/PV cell" @default.
- CS202002013_47 hasRelatedSynonym "Sst_7" @default.
- CS202002013_47 type B9104b13344a9477963a0dec0eee9660e @default.
- CS202002013_47 type Bbca5fc9c0f86d916a591442a97667bb7 @default.
- CS202002013_47 type PCL_0010001 @default.
- CS202002013_47 type NamedIndividual @default.
- CS202002013_47 comment "In Mouse primary motor cortex (CCN202002013), Sst Th_3 is a member of the Sst subclass. Sst Th_3 includes the Patch-seq and connectivity types Sst_7. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Cort and Th (F-beta = 0.609), based on the NS Forest method of marker gene selection. Sst Th_3 cells represent 1.53% of all Sst cells collected in the snRNA-seq 10X v3 B dataset. Sst Th_3 cells have an average of 5026 genes detected, which is 205 more than the average for all Sst cells (4821). Sst Th_3 cells have an average firing rate of 52.41 Hz, compared to 48.24 Hz for all Sst cells recorded. Other distinguishing features include an input resistance of 312.04 MOhms (270.6 MOhms in all Sst cells), and upstroke:downstroke ratio of 1.92 (1.91 for all Sst cells). The most distinguishing morpholgical features of Sst Th_3, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.82 vs. 0.41 average for all Sst cells), axon total length (11477.96 vs. 16640.19 microns for all Sst cells), dendrite total length (3327.22 vs. 2670.25 microns for all Sst cells), and stems (5.83 vs. 6.19 for all Sst cells)." @default.
- CS202002013_47 isDefinedBy cs202002013.owl @default.
- CS202002013_47 label "RNAseq 047 - CS202002013_47" @default.
- CS202002013_47 prefLabel "Sst Th_3" @default.