Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_5> ?p ?o ?g. }
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- CS202002013_5 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_5 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_5 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_5 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_5 cell_set_aligned_alias "Lamp5_1" @default.
- CS202002013_5 cell_set_label "RNAseq 005" @default.
- CS202002013_5 cell_set_preferred_alias "Lamp5 Pdlim5_1" @default.
- CS202002013_5 node_metadata "{"cell_set_preferred_alias": "Lamp5 Pdlim5_1", "original_label": "Lamp5 Pdlim5_1", "cell_set_label": "RNAseq 005", "cell_set_accession": "CS202002013_5", "cell_set_aligned_alias": "Lamp5_1", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "PMID:34616066|PMID:34616062", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#FF7290"}" @default.
- CS202002013_5 original_label "Lamp5 Pdlim5_1" @default.
- CS202002013_5 PCL_0010051 "Cell Type" @default.
- CS202002013_5 PCL_0010059 "CS202002013_5" @default.
- CS202002013_5 RO_0015003 CS202002013_131 @default.
- CS202002013_5 hasExactSynonym "Lamp5_1" @default.
- CS202002013_5 hasRelatedSynonym "Lamp5_1" @default.
- CS202002013_5 hasRelatedSynonym "Neurogliaform cell" @default.
- CS202002013_5 type B601e0983ee279eeadca83698aa396cfe @default.
- CS202002013_5 type B8e395d82bcaabbc36079aef39723fbc3 @default.
- CS202002013_5 type PCL_0010001 @default.
- CS202002013_5 type NamedIndividual @default.
- CS202002013_5 comment "In Mouse primary motor cortex (CCN202002013), Lamp5 Pdlim5_1 is a member of the Lamp5 subclass. Lamp5 Pdlim5_1 includes the Patch-seq and connectivity types Lamp5_1. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Dock5 and Ndnf and Ndst4 (F-beta = 0.515), based on the NS Forest method of marker gene selection. Lamp5 Pdlim5_1 cells represent 8.94% of all Lamp5 cells collected in the snRNA-seq 10X v3 B dataset. Lamp5 Pdlim5_1 cells have an average of 4354 genes detected, which is 274 less than the average for all Lamp5 cells (4628). Lamp5 Pdlim5_1 cells have an average firing rate of 35.83 Hz, compared to 40.62 Hz for all Lamp5 cells recorded. Other distinguishing features include an input resistance of 221 MOhms (240.82 MOhms in all Lamp5 cells), and upstroke:downstroke ratio of 2.45 (3.13 for all Lamp5 cells). The most distinguishing morpholgical features of Lamp5 Pdlim5_1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.08 vs. 0.2 average for all Lamp5 cells), axon total length (7758.72 vs. 10733.35 microns for all Lamp5 cells), dendrite total length (2749.69 vs. 2247.19 microns for all Lamp5 cells), and stems (6.33 vs. 7.47 for all Lamp5 cells)." @default.
- CS202002013_5 isDefinedBy cs202002013.owl @default.
- CS202002013_5 label "RNAseq 005 - CS202002013_5" @default.
- CS202002013_5 prefLabel "Lamp5 Pdlim5_1" @default.