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- CS202002013_51 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_51 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_51 cell_set_label "RNAseq 051" @default.
- CS202002013_51 cell_set_preferred_alias "Pvalb Kank4" @default.
- CS202002013_51 node_metadata "{"cell_set_preferred_alias": "Pvalb Kank4", "original_label": "Pvalb Kank4", "cell_set_label": "RNAseq 051", "cell_set_accession": "CS202002013_51", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#BC4B11"}" @default.
- CS202002013_51 original_label "Pvalb Kank4" @default.
- CS202002013_51 PCL_0010051 "Cell Type" @default.
- CS202002013_51 PCL_0010059 "CS202002013_51" @default.
- CS202002013_51 RO_0015003 CS202002013_175 @default.
- CS202002013_51 hasRelatedSynonym "Lower FS Basket cell" @default.
- CS202002013_51 hasRelatedSynonym "Pvalb-like_C1" @default.
- CS202002013_51 type B1e23b74930aaaf4f56d69169a85ac1a8 @default.
- CS202002013_51 type Bbc97d57ad25e028e5d67605d5b1b1d38 @default.
- CS202002013_51 type PCL_0010001 @default.
- CS202002013_51 type NamedIndividual @default.
- CS202002013_51 comment "In Mouse primary motor cortex (CCN202002013), Pvalb Kank4 is a member of the Pvalb subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Cacna2d2 and Sema3e and Syt2 and Tmem132d (F-beta = 0.614), based on the NS Forest method of marker gene selection. Pvalb Kank4 cells represent 9.1% of all Pvalb cells collected in the snRNA-seq 10X v3 B dataset. Pvalb Kank4 cells have an average of 5735 genes detected, which is 688 more than the average for all Pvalb cells (5047). Pvalb Kank4 cells have an average firing rate of 145.5 Hz, compared to 121.98 Hz for all Pvalb cells recorded. Other distinguishing features include an input resistance of 140.37 MOhms (175.36 MOhms in all Pvalb cells), and upstroke:downstroke ratio of 1.16 (1.24 for all Pvalb cells). The most distinguishing morpholgical features of Pvalb Kank4, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.7 vs. 0.48 average for all Pvalb cells), axon total length (22509.63 vs. 16688.56 microns for all Pvalb cells), dendrite total length (2240.96 vs. 1892.01 microns for all Pvalb cells), and stems (5.56 vs. 5.8 for all Pvalb cells)." @default.
- CS202002013_51 isDefinedBy cs202002013.owl @default.
- CS202002013_51 label "RNAseq 051 - CS202002013_51" @default.
- CS202002013_51 prefLabel "Pvalb Kank4" @default.