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- CS202002013_52 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_52 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_52 cell_set_label "RNAseq 052" @default.
- CS202002013_52 cell_set_preferred_alias "Pvalb Calb1_1" @default.
- CS202002013_52 node_metadata "{"cell_set_preferred_alias": "Pvalb Calb1_1", "original_label": "Pvalb Calb1_1", "cell_set_label": "RNAseq 052", "cell_set_accession": "CS202002013_52", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#B6411E"}" @default.
- CS202002013_52 original_label "Pvalb Calb1_1" @default.
- CS202002013_52 PCL_0010051 "Cell Type" @default.
- CS202002013_52 PCL_0010059 "CS202002013_52" @default.
- CS202002013_52 RO_0015003 CS202002013_176 @default.
- CS202002013_52 hasRelatedSynonym "Lower FS Basket cell" @default.
- CS202002013_52 hasRelatedSynonym "Pvalb-like_C1" @default.
- CS202002013_52 type B0c35f2a7ebd36fe0bfc6c272d86f69b1 @default.
- CS202002013_52 type Bb3180a0f18795966ddeb8de837ad4fd5 @default.
- CS202002013_52 type PCL_0010001 @default.
- CS202002013_52 type NamedIndividual @default.
- CS202002013_52 comment "In Mouse primary motor cortex (CCN202002013), Pvalb Calb1_1 is a member of the Pvalb subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Cort and Gm28807 and Nxph2 (F-beta = 0.345), based on the NS Forest method of marker gene selection. Pvalb Calb1_1 cells represent 2.5% of all Pvalb cells collected in the snRNA-seq 10X v3 B dataset. Pvalb Calb1_1 cells have an average of 5402 genes detected, which is 355 more than the average for all Pvalb cells (5047). Pvalb Calb1_1 cells have an average firing rate of 95.73 Hz, compared to 121.98 Hz for all Pvalb cells recorded. Other distinguishing features include an input resistance of 182.95 MOhms (175.36 MOhms in all Pvalb cells), and upstroke:downstroke ratio of 1.28 (1.24 for all Pvalb cells). The most distinguishing morpholgical features of Pvalb Calb1_1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.82 vs. 0.48 average for all Pvalb cells), axon total length (15990.14 vs. 16688.56 microns for all Pvalb cells), dendrite total length (2343.12 vs. 1892.01 microns for all Pvalb cells), and stems (5.42 vs. 5.8 for all Pvalb cells)." @default.
- CS202002013_52 isDefinedBy cs202002013.owl @default.
- CS202002013_52 label "RNAseq 052 - CS202002013_52" @default.
- CS202002013_52 prefLabel "Pvalb Calb1_1" @default.