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- CS202002013_54 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_54 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_54 cell_set_label "RNAseq 054" @default.
- CS202002013_54 cell_set_preferred_alias "Pvalb Reln" @default.
- CS202002013_54 node_metadata "{"cell_set_preferred_alias": "Pvalb Reln", "original_label": "Pvalb Reln", "cell_set_label": "RNAseq 054", "cell_set_accession": "CS202002013_54", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#9C4165"}" @default.
- CS202002013_54 original_label "Pvalb Reln" @default.
- CS202002013_54 PCL_0010051 "Cell Type" @default.
- CS202002013_54 PCL_0010059 "CS202002013_54" @default.
- CS202002013_54 RO_0015003 CS202002013_177 @default.
- CS202002013_54 hasRelatedSynonym "Pvalb-like_C1" @default.
- CS202002013_54 hasRelatedSynonym "Upper FS Basket cell" @default.
- CS202002013_54 type B3bd9dd414c0ec5be1a762e3e29640d30 @default.
- CS202002013_54 type Beec0687a414e9d2a75d4e78d0b1b58a3 @default.
- CS202002013_54 type PCL_0010001 @default.
- CS202002013_54 type NamedIndividual @default.
- CS202002013_54 comment "In Mouse primary motor cortex (CCN202002013), Pvalb Reln is a member of the Pvalb subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Cntnap4 and Gm46102 (F-beta = 0.57), based on the NS Forest method of marker gene selection. Pvalb Reln cells represent 31.81% of all Pvalb cells collected in the snRNA-seq 10X v3 B dataset. Pvalb Reln cells have an average of 4791 genes detected, which is 256 less than the average for all Pvalb cells (5047). Pvalb Reln cells have an average firing rate of 124.71 Hz, compared to 121.98 Hz for all Pvalb cells recorded. Other distinguishing features include an input resistance of 170.67 MOhms (175.36 MOhms in all Pvalb cells), and upstroke:downstroke ratio of 1.23 (1.24 for all Pvalb cells). The most distinguishing morpholgical features of Pvalb Reln, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.39 vs. 0.48 average for all Pvalb cells), axon total length (18083.46 vs. 16688.56 microns for all Pvalb cells), dendrite total length (1756.89 vs. 1892.01 microns for all Pvalb cells), and stems (6.03 vs. 5.8 for all Pvalb cells)." @default.
- CS202002013_54 isDefinedBy cs202002013.owl @default.
- CS202002013_54 label "RNAseq 054 - CS202002013_54" @default.
- CS202002013_54 prefLabel "Pvalb Reln" @default.