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- CS202002013_55 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_55 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_55 cell_set_label "RNAseq 055" @default.
- CS202002013_55 cell_set_preferred_alias "Pvalb Il1rapl2" @default.
- CS202002013_55 node_metadata "{"cell_set_preferred_alias": "Pvalb Il1rapl2", "original_label": "Pvalb Il1rapl2", "cell_set_label": "RNAseq 055", "cell_set_accession": "CS202002013_55", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#BC2C41"}" @default.
- CS202002013_55 original_label "Pvalb Il1rapl2" @default.
- CS202002013_55 PCL_0010051 "Cell Type" @default.
- CS202002013_55 PCL_0010059 "CS202002013_55" @default.
- CS202002013_55 RO_0015003 CS202002013_177 @default.
- CS202002013_55 hasRelatedSynonym "Pvalb-like_C1" @default.
- CS202002013_55 hasRelatedSynonym "Upper FS Basket cell" @default.
- CS202002013_55 type B2d1a2ee2415ae2d1a758b57920636554 @default.
- CS202002013_55 type B6c62a2790638fd03e07351125beabbb0 @default.
- CS202002013_55 type PCL_0010001 @default.
- CS202002013_55 type NamedIndividual @default.
- CS202002013_55 comment "In Mouse primary motor cortex (CCN202002013), Pvalb Il1rapl2 is a member of the Pvalb subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Eya4 and Il1rapl2 (F-beta = 0.782), based on the NS Forest method of marker gene selection. Pvalb Il1rapl2 cells represent 23.5% of all Pvalb cells collected in the snRNA-seq 10X v3 B dataset. Pvalb Il1rapl2 cells have an average of 4962 genes detected, which is 85 less than the average for all Pvalb cells (5047). Pvalb Il1rapl2 cells have an average firing rate of 123.45 Hz, compared to 121.98 Hz for all Pvalb cells recorded. Other distinguishing features include an input resistance of 156.79 MOhms (175.36 MOhms in all Pvalb cells), and upstroke:downstroke ratio of 1.24 (1.24 for all Pvalb cells). The most distinguishing morpholgical features of Pvalb Il1rapl2, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.28 vs. 0.48 average for all Pvalb cells), axon total length (16925.27 vs. 16688.56 microns for all Pvalb cells), dendrite total length (1719.61 vs. 1892.01 microns for all Pvalb cells), and stems (5.71 vs. 5.8 for all Pvalb cells)." @default.
- CS202002013_55 isDefinedBy cs202002013.owl @default.
- CS202002013_55 label "RNAseq 055 - CS202002013_55" @default.
- CS202002013_55 prefLabel "Pvalb Il1rapl2" @default.