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- CS202002013_59 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_59 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_59 cell_set_label "RNAseq 059" @default.
- CS202002013_59 cell_set_preferred_alias "L2/3 IT_2" @default.
- CS202002013_59 node_metadata "{"cell_set_preferred_alias": "L2/3 IT_2", "original_label": "L2/3 IT_2", "cell_set_label": "RNAseq 059", "cell_set_accession": "CS202002013_59", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#07D945"}" @default.
- CS202002013_59 original_label "L2/3 IT_2" @default.
- CS202002013_59 PCL_0010051 "Cell Type" @default.
- CS202002013_59 PCL_0010059 "CS202002013_59" @default.
- CS202002013_59 RO_0015003 CS202002013_184 @default.
- CS202002013_59 type Bbf203e6a16c8e3d139feae36bfca45c1 @default.
- CS202002013_59 type Bec74fe22e7b1146460a8f129fb640ad7 @default.
- CS202002013_59 type PCL_0010001 @default.
- CS202002013_59 type NamedIndividual @default.
- CS202002013_59 comment "In Mouse primary motor cortex (CCN202002013), L2/3 IT_2 is a member of the L2/3 IT subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Ccdc3 and Cux1 and Meis2 and Otof (F-beta = 0.52), based on the NS Forest method of marker gene selection. L2/3 IT_2 cells represent 6.86% of all L2/3 IT cells collected in the snRNA-seq 10X v3 B dataset. L2/3 IT_2 cells have an average of 5767 genes detected, which is 536 more than the average for all L2/3 IT cells (5231). L2/3 IT_2 cells have an average firing rate of 20 Hz, compared to 17.34 Hz for all L2/3 IT cells recorded. Other distinguishing features include an input resistance of 59.39 MOhms (91.42 MOhms in all L2/3 IT cells), and upstroke:downstroke ratio of 4.23 (4.49 for all L2/3 IT cells). The most distinguishing morpholgical features of L2/3 IT_2, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.13 vs. 0.17 average for all L2/3 IT cells), dendrite total length (3326.54 vs. 4647.41 microns for all L2/3 IT cells), and stems (7 vs. 7.63 for all L2/3 IT cells)." @default.
- CS202002013_59 isDefinedBy cs202002013.owl @default.
- CS202002013_59 label "RNAseq 059 - CS202002013_59" @default.
- CS202002013_59 prefLabel "L2/3 IT_2" @default.