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- CS202002013_6 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_6 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_6 cell_set_label "RNAseq 006" @default.
- CS202002013_6 cell_set_preferred_alias "Lamp5 Pdlim5_2" @default.
- CS202002013_6 node_metadata "{"cell_set_preferred_alias": "Lamp5 Pdlim5_2", "original_label": "Lamp5 Pdlim5_2", "cell_set_label": "RNAseq 006", "cell_set_accession": "CS202002013_6", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#FF8C97"}" @default.
- CS202002013_6 original_label "Lamp5 Pdlim5_2" @default.
- CS202002013_6 PCL_0010051 "Cell Type" @default.
- CS202002013_6 PCL_0010059 "CS202002013_6" @default.
- CS202002013_6 RO_0015003 CS202002013_131 @default.
- CS202002013_6 RO_0015003 CS202002013_238 @default.
- CS202002013_6 hasRelatedSynonym "Lamp5-like_C2" @default.
- CS202002013_6 hasRelatedSynonym "Neurogliaform cell" @default.
- CS202002013_6 type Bd41cb0d69cbd06c61b1e4117a0d03e57 @default.
- CS202002013_6 type Befbc1f22c0056ed3205dd6d51a63fc25 @default.
- CS202002013_6 type PCL_0010001 @default.
- CS202002013_6 type NamedIndividual @default.
- CS202002013_6 comment "In Mouse primary motor cortex (CCN202002013), Lamp5 Pdlim5_2 is a member of the Lamp5 subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Ndnf and Pde11a (F-beta = 0.69), based on the NS Forest method of marker gene selection. Lamp5 Pdlim5_2 cells represent 15.42% of all Lamp5 cells collected in the snRNA-seq 10X v3 B dataset. Lamp5 Pdlim5_2 cells have an average of 4568 genes detected, which is 60 less than the average for all Lamp5 cells (4628). Lamp5 Pdlim5_2 cells have an average firing rate of 37.3 Hz, compared to 40.62 Hz for all Lamp5 cells recorded. Other distinguishing features include an input resistance of 228.13 MOhms (240.82 MOhms in all Lamp5 cells), and upstroke:downstroke ratio of 3.35 (3.13 for all Lamp5 cells). The most distinguishing morpholgical features of Lamp5 Pdlim5_2, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.09 vs. 0.2 average for all Lamp5 cells), axon total length (8307.5 vs. 10733.35 microns for all Lamp5 cells), dendrite total length (2201.26 vs. 2247.19 microns for all Lamp5 cells), and stems (8 vs. 7.47 for all Lamp5 cells)." @default.
- CS202002013_6 isDefinedBy cs202002013.owl @default.
- CS202002013_6 label "RNAseq 006 - CS202002013_6" @default.
- CS202002013_6 prefLabel "Lamp5 Pdlim5_2" @default.